Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08250 594 / 0 AtADT6, ADT6 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) AT2G27820 572 / 0 ADT3, PD1 arogenate dehydratase 3, prephenate dehydratase 1 (.1) AT3G44720 566 / 0 ADT4 arogenate dehydratase 4 (.1) AT5G22630 549 / 0 ADT5 arogenate dehydratase 5 (.1) AT1G11790 409 / 2e-141 AtADT1, ADT1 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) AT3G07630 397 / 2e-136 AtADT2, ADT2 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043369 [exp] 807 / 0 AT1G08250 599 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10020549 [exp] 677 / 0 AT1G08250 602 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10009396 [exp] 673 / 0 AT1G08250 607 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Lus10015130 [exp] 427 / 1e-148 AT1G11790 434 / 4e-152 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10031547 [exp] 427 / 2e-148 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10018128 [exp] 394 / 6e-135 AT3G07630 456 / 5e-160 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10036135 [exp] 391 / 3e-134 AT3G07630 449 / 7e-158 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2) Lus10015561 [exp] 344 / 5e-116 AT1G11790 437 / 3e-153 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Lus10020035 [exp] 332 / 4e-111 AT1G11790 426 / 5e-149 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G188100 [exp] 664 / 0 AT1G08250 612 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.009G148800 [exp] 664 / 0 AT1G08250 606 / 0.0 Arabidopsis thaliana arogenate dehydratase 6, arogenate dehydratase 6 (.1) Potri.011G004700 [exp] 437 / 3e-152 AT1G11790 527 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.004G013400 [exp] 419 / 6e-145 AT1G11790 513 / 0.0 Arabidopsis thaliana arogenate dehydratase 1, arogenate dehydratase 1 (.1.2) Potri.008G195500 [exp] 414 / 5e-143 AT3G07630 504 / 2e-179 Arabidopsis thaliana arogenate dehydratase 2, arogenate dehydratase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0177 [flax] [poplar] PBP PF00800 [flax] [poplar] PDT Prephenate dehydratase
Representative CDS sequence Show only first row Show all	>Lus10019526 pacid=23181617 polypeptide=Lus10019526 locus=Lus10019526.g ID=Lus10019526.BGIv1.0 annot-version=v1.0 ATGAAGGCTGTATCACCTTCTCCCGCTCTCAACTCTTCCTTAATCTCCGGCGCCACCGGTCCCCGCCGCCTCTCTCGCCTAACTCCCGCCACTGCACTCT CCGTCAATTGCATCTACCGCTCCTCCGACTCCCTCCACTTCCCCGCCGGGGCCGTCTCCAGTAAATCCGACTGGCAGAGCTCATGCGCTATCTTGTCCAG CAAAGTCTTTGCTCAGGATCATCAGCAGGCCGCTGATACCAGATCTGCCTCTGGAGGCACTCATGCTGCTACCGGAGGAGCTTCCGATCCTTTGTCTGCC ATTAATGGTTACAATACCGTTGATCTTAATTTAATCCCGCTCGACAAATCTAATGGCAGTACTACTAGCATCAGCAAGCCTCAGAAGCCGTTGACCATTA CTGACCTCGCACCGGCTCCTTTGCACGGCTCTCAGCTCCGAGTTGCTTACCAGGGAGTCCCTGGAGCTTACTCCGAGGCTGCTGCTGGTAAGGCTTATCT CAACTGTGAGGCCATCCCTTGTGACCAGTTTGAGGTCGCTTTCCAGGCGGTGGAGCTCTGGATTGCGGATCGAGCTGTTTTGCCTGTTGAGAATTCTTTA GGCGGATCTATTCATAGGAATTACGATTTGCTCCTCCGCCACCGGCTCCACATCGTCGGAGAAGTTCAGCTGCCGGTTCATCACTGTTTGATGGCGCTAC CTGGAGTGAGGATGGAGTACATCACGCGCGTCATATCGCATCCGCAGGCGCTAGCGCAATGTGAGCACACGTTGACCAAGCTGGGACTCCAGGCTGCGCG TGAGGCGGTGGACGACACAGCTGGGGCGGCGGAGTATATCGCTGCTAACAACCTGAGAGATACGGCGGCGATTGCGAGCGCGAAGGCGGCGGAGCTGTAT GGGATGCAGATCTTGGCGAACGGGATCCAGGACGAGTCAGGAAACGTGACGCGGTTCGTGATGCTGGCGCGTGAGCCAATAATACCGAGGACTGACCGGC CGTTCAAGACGAGCATCGTGTTCGCCCACGACAAGGGGACGAGCGTGCTGTTCAAGGTGCTGTCAGCTTTCGCGTTCAGGAACATAAACTTGACGAAGAT AGAATCGCGGCCGCACCGGAACAGGCCGATCAGGCTGGTTGACGACGCGAACGTAGGGACGGCGAAGCACTTCGAGTACCTGTTCTACGTGGACTTCGAG GCGTCGATGGCGGAGGTGAGAGCACAGAACGCGCTGGCGGAGGTGCAAGAGTTCACGTCCTTCTTGAGAGTGTTGGGTAGTTATCCGATGGATATGACCC CCATGGTCCCCACCTAG
AA sequence Show only first row Show all	>Lus10019526 pacid=23181617 polypeptide=Lus10019526 locus=Lus10019526.g ID=Lus10019526.BGIv1.0 annot-version=v1.0 MKAVSPSPALNSSLISGATGPRRLSRLTPATALSVNCIYRSSDSLHFPAGAVSSKSDWQSSCAILSSKVFAQDHQQAADTRSASGGTHAATGGASDPLSA INGYNTVDLNLIPLDKSNGSTTSISKPQKPLTITDLAPAPLHGSQLRVAYQGVPGAYSEAAAGKAYLNCEAIPCDQFEVAFQAVELWIADRAVLPVENSL GGSIHRNYDLLLRHRLHIVGEVQLPVHHCLMALPGVRMEYITRVISHPQALAQCEHTLTKLGLQAAREAVDDTAGAAEYIAANNLRDTAAIASAKAAELY GMQILANGIQDESGNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNINLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFE ASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPMVPT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10019526 [exp]	0	1
AT2G25250			unknown protein		Lus10041025 [exp]	1.0	0.9334
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	2.0	0.9182
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	2.0	0.9323
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	2.8	0.9110
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	3.0	0.9215
AT5G17350			unknown protein		Lus10034636 [exp]	3.5	0.9143
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	4.6	0.9114
					Lus10018622 [exp]	5.2	0.9029
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	6.3	0.9174
AT4G22240			Plastid-lipid associated prote...		Lus10014790 [exp]	7.9	0.8830

Compare expression of checked genes

Lus10019526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.