Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 466 / 2e-162 Major facilitator superfamily protein (.1) AT1G18000 466 / 2e-162 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043371 [exp] 522 / 0 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10019528 [exp] 520 / 0 AT1G18010 659 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 511 / 1e-179 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 461 / 1e-160 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10009416 [exp] 367 / 2e-125 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1) Lus10043370 [exp] 119 / 1e-31 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009413 [exp] 0 / 1 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1) Lus10009415 [exp] 0 / 1 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 521 / 0 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 352 / 2e-118 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05978 [flax] [poplar] UNC-93 Ion channel regulatory protein UNC-93
Representative CDS sequence Show only first row Show all	>Lus10019527 pacid=23181499 polypeptide=Lus10019527 locus=Lus10019527.g ID=Lus10019527.BGIv1.0 annot-version=v1.0 ATGGTTTCGGTGGAAGAAGGCGACATGACCGTGACCAAAAAGACGGCTGCCGGCAGCTCCAGGTACAGCTACAACTCTTCATTGGTTCAAGTGATCTTGA CGGCGTTGGTATGCTTCTGCACCATTGGAATGATCAGGGCTCTTTCCGGGATGGGCGGAGGCGGCCAGAGGGACCCAACCGCCGCCAACAACGCCAACAC CGCCATCTACGCCACCTTCGCCTTCTCCGGCGTCCTCAGCGGCGGGCTTTTCAACGTTCTCGGACCTCGGCTCATGCTCCCGGCCGGCTGCATGGGTTGT GTGCTGCTAGCCGGGTCGTTTCTTTACTACAATCATACCTCGAATGAGGCTTTCATGGTCGTAGCTGGCGTGATCGCCGGCGTCGGAGCTGGGTTTCTGT GGGCCGTACAGGGGGCCGTCATGACTTCCTACCCGCCGCCTCACCGGAAAGGGATGTACATTTCCTTGTTTTGGGTGATCTTTAGCTCCGGCGGGGTGGT CGGCGGTCTCGTTCCTTTCTTCCTCAATTTTCACCGGCAGTTGGATTCTGTGAACGATGGCACTTACATTGCTTTCATGTGTTTCATGGGAACTGGTGCC CTGATATCACTGGCCGTCCTACCGCCAAGTCAGGTATTCCGTGAAGACGGCAGCCAATGTACATTGGTTACAAAGAATCAGCACTCAAAATTTTCAACAG AGGCCGTAGAGATTCTCAAACTCTTCGGGAACTGGAAGATGCTCCTCATCGCACCGGCAGCATGGGCCAGTAACTTCTTCTACGCCTACGAATTCAATAA CGTCAACGCTGCACAGTTCAACTTAAGAACACGCGGGCTGAACAACGTTTCCTACTGGGGAGCCCAGATGGTCGGCTCCATACTCATCGGCTACGTGTTT GACTTCGGGTTTACCAGCAGAAGACGAAGAGGTTTCCTTGGGATCGGGACCGTTGGTGTCGTAGGAACAGTTATCTGGGGCGGCGGACTAGCGAACCAGC TCGGTTACTCTTTCCAAAACTCGGTTGATCCCAAGTTGGATTTCATCGATTCCGGCGGGGCTAAATTTGTAGGGCCGTTTATGTTGTATTTTAGTTACGG GTTGTTTGATGCTGTATTTCAGAGTATGATCTATTGGGTGATTGGTGCGTTGGCGGATGATACGGAGACTCTGAGCAGGTACGCTGGGTTCTACAAAGGG ATGCAGAGTGCGGGAGCTGCGGTGGCTTGGCAGCTTGATGCTAGAAAAGTTCCGATGCTGACGCAGTTGGTTGTGAACTGGTCGCTTACGACGATAAGTT ATCCGCTGCTTGCCATACTGGTGGCATCAGCTGTTGTTGATGATATTAACTACACACAAGCGTAG
AA sequence Show only first row Show all	>Lus10019527 pacid=23181499 polypeptide=Lus10019527 locus=Lus10019527.g ID=Lus10019527.BGIv1.0 annot-version=v1.0 MVSVEEGDMTVTKKTAAGSSRYSYNSSLVQVILTALVCFCTIGMIRALSGMGGGGQRDPTAANNANTAIYATFAFSGVLSGGLFNVLGPRLMLPAGCMGC VLLAGSFLYYNHTSNEAFMVVAGVIAGVGAGFLWAVQGAVMTSYPPPHRKGMYISLFWVIFSSGGVVGGLVPFFLNFHRQLDSVNDGTYIAFMCFMGTGA LISLAVLPPSQVFREDGSQCTLVTKNQHSKFSTEAVEILKLFGNWKMLLIAPAAWASNFFYAYEFNNVNAAQFNLRTRGLNNVSYWGAQMVGSILIGYVF DFGFTSRRRRGFLGIGTVGVVGTVIWGGGLANQLGYSFQNSVDPKLDFIDSGGAKFVGPFMLYFSYGLFDAVFQSMIYWVIGALADDTETLSRYAGFYKG MQSAGAAVAWQLDARKVPMLTQLVVNWSLTTISYPLLAILVASAVVDDINYTQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10019527 [exp]	0	1
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10032184 [exp]	3.2	0.7166
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10035911 [exp]	14.4	0.6535
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	14.8	0.6642
AT3G08870			Concanavalin A-like lectin pro...		Lus10012509 [exp]	22.6	0.6916
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Lus10025752 [exp]	39.2	0.5882
AT1G03700			Uncharacterised protein family...		Lus10032548 [exp]	46.1	0.5919
AT1G67623			F-box family protein (.1)		Lus10030790 [exp]	49.7	0.5864
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10032062 [exp]	63.3	0.5848
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Lus10037092 [exp]	67.0	0.5588
AT2G15220			Plant basic secretory protein ...		Lus10001607 [exp]	74.4	0.5497

Compare expression of checked genes

Lus10019527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.