Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18010 605 / 0 Major facilitator superfamily protein (.1) AT1G18000 605 / 0 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043371 [exp] 837 / 0 AT1G18010 657 / 0.0 Major facilitator superfamily protein (.1) Lus10006288 [exp] 712 / 0 AT1G18010 649 / 0.0 Major facilitator superfamily protein (.1) Lus10020560 [exp] 647 / 0 AT1G18010 573 / 0.0 Major facilitator superfamily protein (.1) Lus10019527 [exp] 577 / 0 AT1G18010 578 / 0.0 Major facilitator superfamily protein (.1) Lus10009416 [exp] 427 / 7e-149 AT1G18010 405 / 1e-140 Major facilitator superfamily protein (.1) Lus10009415 [exp] 99 / 1e-24 AT1G18010 108 / 1e-28 Major facilitator superfamily protein (.1) Lus10043370 [exp] 96 / 5e-23 AT1G18010 103 / 3e-26 Major facilitator superfamily protein (.1) Lus10009413 [exp] 0 / 1 AT1G18010 152 / 2e-47 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G005100 [exp] 669 / 0 AT1G18010 630 / 0.0 Major facilitator superfamily protein (.1) Potri.012G011000 [exp] 477 / 3e-167 AT1G18010 422 / 5e-146 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Lus10019528 pacid=23181570 polypeptide=Lus10019528 locus=Lus10019528.g ID=Lus10019528.BGIv1.0 annot-version=v1.0 ATGGGATTCCACGGCGATCAAGAATCCGACACCACCACCACGGCGATGCCAAAAAACTCCAGTCTAAGGTACGATTCCCCGTTCGTACAAGTTGTCCTCA TCGGATTAGTGTGCTTCTGCTGTCCGGGGATGTTCAACGCCCTCTCCGGGATGGGCGGAGGTGGCCAGGTGGACCCCACTGCAGCCAACAACGCCAACAC CGCCCTCTATACCACCTTCGCCGTCTTCGGAGTCCTCGGCGGCGGCTTCTACAACATCCTCGGCCCTCGACTCACCCTCGCCGCCGGCTGCAGCACCTAC GTCCTCTACGCCGGCTCGTTCCTCTACTACAACCACCACAAGCACCAGGCTTTTGCGGTCGCCGCGGGAGCAATCCTCGGAATCGGCGCCGGATTCGTTT GGGCGGGGCAAGGGGCGATCATGACGTCTTACCCTCCTCCAAATCGGAAAGGGATGTACATCTCCCTCTTCTGGAGCATATTCAACACGGGAGGAGTCAT CGGCGGCCTCATCCCTTTCGCGTTGAATTACCACCGACAAGCCCCTTCCGTCAGCGACGGCACATACATCGGATTCATGGCCTTTATGTCGATGGGGACT CTCCTCTCCTTCGCAATCCTCCCGCCGAGCAAAGTAATCCGCGACGACGGGACCCGATGCACGAAGATCAAATATTCAAAAGTCTCGACGGAAGGGATTG AGATCTTGAAGCTGTTCGGGAACTGGAAGATGCTTTTAATCGCTCCGGCAGCATGGGCGTCTAATTTCTTCTACACGTACCAATTCAACAACGTCAACGC CGCGAAATTCAACGTCCGGACGAGAGGATTGAACAACGTGTTCTACTGGGGAGCGCAGATGGTGGGGTCTTTCGGGATCGGGTACGTTTTGGATTTCAGC TTCGAGAGCAGGAGGAAAAGAGGGTTTCTAGGGATTGCGATTGTGGGTGTGTTGGGAACCGTGATTTGGGCCGGCGGGTTGGTTGACCAGCTGGGTTACT CGTTCGAAAAGATGCCGGAGAAGTTGGATTTCAAGGAATCCGGTGGGAAGTTCGCTGGGCCGTTTGTGCTATACTTTAGCTATGGGTTTCTGGATGCGAT ATTCCAGAGCACTGTGTATTGGGTGATTGGGGGGTTGGCGAATGAATCGGAGGTTTTGAGCAGGTACGTTGGGTTTTACAAAGGGGTGCAGAGTGCCGGA GCTGCGATTTCTTGGCAACTTGATACCAAGAAAGTTCCGATGCTGACGCAGCTGATTGTGAATTGGGTGCTTACCACGGTGAGTTACCCGTTGCTGATAG TTTTGGTGGCGCTGGCTGTTAGCGATGACGGAGAGTCGGAAAGTGAAAATGGAGAAAAAACCATGGATGACAGCGCTCAGAATTATGGAGATAACAAGCC AATGTAG
AA sequence Show only first row Show all	>Lus10019528 pacid=23181570 polypeptide=Lus10019528 locus=Lus10019528.g ID=Lus10019528.BGIv1.0 annot-version=v1.0 MGFHGDQESDTTTTAMPKNSSLRYDSPFVQVVLIGLVCFCCPGMFNALSGMGGGGQVDPTAANNANTALYTTFAVFGVLGGGFYNILGPRLTLAAGCSTY VLYAGSFLYYNHHKHQAFAVAAGAILGIGAGFVWAGQGAIMTSYPPPNRKGMYISLFWSIFNTGGVIGGLIPFALNYHRQAPSVSDGTYIGFMAFMSMGT LLSFAILPPSKVIRDDGTRCTKIKYSKVSTEGIEILKLFGNWKMLLIAPAAWASNFFYTYQFNNVNAAKFNVRTRGLNNVFYWGAQMVGSFGIGYVLDFS FESRRKRGFLGIAIVGVLGTVIWAGGLVDQLGYSFEKMPEKLDFKESGGKFAGPFVLYFSYGFLDAIFQSTVYWVIGGLANESEVLSRYVGFYKGVQSAG AAISWQLDTKKVPMLTQLIVNWVLTTVSYPLLIVLVALAVSDDGESESENGEKTMDDSAQNYGDNKPM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18010			Major facilitator superfamily ...		Lus10019528 [exp]	0	1
AT1G47710			Serine protease inhibitor (SER...		Lus10034364 [exp]	3.7	0.8265
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	9.4	0.8107
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Lus10040602 [exp]	12.5	0.7651
					Lus10038131 [exp]	13.4	0.7546
AT5G53110			RING/U-box superfamily protein...		Lus10025491 [exp]	15.0	0.7809
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	16.0	0.7987
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10040036 [exp]	17.8	0.7891
					Lus10014515 [exp]	19.4	0.7926
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10035868 [exp]	20.1	0.7636
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	22.3	0.7084

Compare expression of checked genes

Lus10019528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.