Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27740 199 / 5e-66 Family of unknown function (DUF662) (.1) AT2G36410 189 / 7e-62 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 188 / 9e-62 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 179 / 6e-58 Family of unknown function (DUF662) (.1) AT3G52900 164 / 2e-52 Family of unknown function (DUF662) (.1) AT2G36355 151 / 3e-47 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT5G03660 150 / 1e-46 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043372 [exp] 300 / 2e-105 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10027724 [exp] 198 / 2e-65 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 197 / 7e-65 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10023876 [exp] 191 / 7e-63 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 167 / 6e-53 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10034160 [exp] 142 / 9e-44 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 139 / 9e-42 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147500 [exp] 217 / 5e-73 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 216 / 2e-72 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.006G115400 [exp] 180 / 2e-58 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 166 / 6e-53 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10019529 pacid=23181491 polypeptide=Lus10019529 locus=Lus10019529.g ID=Lus10019529.BGIv1.0 annot-version=v1.0 ATGCTGGATCAGCAGCAATTGCAGATGCAGAGGATGGTGCTGAAGAACTCTGGCCTCATATCGTCGAATGATCAGAGCTTCCTTCTGGACGACAAGGAAG AGGAAATGTCCAAGTCCGCGTTGGCAATGTTCCGTGCCAAGGAGGAAGAGATTGAGAGGAAGAAGATGGAGGTCAGAGGCAAAGTAGAGGCTCAGCTCGG ACGCGCTGAAGAGGCCACCAAGCGCTTAGCTGAGATTCGACAAGAGCTTGAAGCATTGACAGATCCGTTGAGGAAGGAAGTGTCGATGGTTCGTAAGCGG ATTGATACTGTCAACCGTGAACTGAAGCCATTAGGCCTAAATTTCCAAAAGAAGGAAAGGGAATACAGAGAAGCACTTGAAGCCTTCAACGAGAAGAACA AGGAGAAAACTCAACTGGTTTCCAAGTTGATGGAGATGGTGGGTGAGAGTGAGAGACTGAGGATGAAGAAGCTGGAGGAGTTGAGCAAACACATTGGAAA TCTTCGCTGA
AA sequence Show only first row Show all	>Lus10019529 pacid=23181491 polypeptide=Lus10019529 locus=Lus10019529.g ID=Lus10019529.BGIv1.0 annot-version=v1.0 MLDQQQLQMQRMVLKNSGLISSNDQSFLLDDKEEEMSKSALAMFRAKEEEIERKKMEVRGKVEAQLGRAEEATKRLAEIRQELEALTDPLRKEVSMVRKR IDTVNRELKPLGLNFQKKEREYREALEAFNEKNKEKTQLVSKLMEMVGESERLRMKKLEELSKHIGNLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	0	1
AT5G26667		PYR6	P-loop containing nucleoside t...		Lus10031611 [exp]	1.4	0.9059
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Lus10023575 [exp]	3.5	0.8746
AT2G27740			Family of unknown function (DU...		Lus10043372 [exp]	3.7	0.8702
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10028658 [exp]	4.0	0.8784
AT1G56720			Protein kinase superfamily pro...		Lus10006215 [exp]	8.3	0.8632
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10024436 [exp]	9.1	0.9060
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Lus10006156 [exp]	11.8	0.8919
AT5G11710			ENTH/VHS family protein (.1)		Lus10007460 [exp]	13.3	0.8755
AT1G56720			Protein kinase superfamily pro...		Lus10036863 [exp]	15.1	0.8826
AT2G40120			Protein kinase superfamily pro...		Lus10040203 [exp]	16.5	0.8680

Compare expression of checked genes

Lus10019529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.