Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44480 582 / 0 BGLU17 beta glucosidase 17 (.1.2) AT2G44450 514 / 2e-179 BGLU15 beta glucosidase 15 (.1) AT3G60130 510 / 7e-178 BGLU16 beta glucosidase 16 (.1.2.3) AT5G44640 506 / 3e-176 BGLU13 beta glucosidase 13 (.1) AT5G42260 503 / 3e-175 BGLU12 beta glucosidase 12 (.1) AT5G24550 481 / 4e-166 BGLU32 beta glucosidase 32 (.1) AT2G25630 479 / 4e-166 BGLU14 beta glucosidase 14 (.1) AT1G26560 476 / 2e-164 BGLU40 beta glucosidase 40 (.1) AT3G18080 471 / 2e-162 BGLU44 B-S glucosidase 44 (.1) AT3G60140 473 / 3e-162 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003915 [exp] 631 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2) Lus10037473 [exp] 601 / 0 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 573 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10031234 [exp] 572 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10024941 [exp] 571 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 569 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031235 [exp] 560 / 0 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10031251 [exp] 557 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10026057 [exp] 535 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G227300 [exp] 754 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 654 / 0 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 630 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.T085301 [exp] 565 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 563 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 560 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 557 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G223900 [exp] 519 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223800 [exp] 519 / 0 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223712 [exp] 518 / 0 AT2G44480 528 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10019531 pacid=23181474 polypeptide=Lus10019531 locus=Lus10019531.g ID=Lus10019531.BGIv1.0 annot-version=v1.0 ATGGGGTATAACCGTCCATTAGTGATTGGGTTGGCAGTGATAGTAGTAATGGCGGCAGTAGCTGCTGGTTTATCGGCAGAAGCTGCAACGCCGCCGATCC GACGACAGCATATAACCATGTCGTTCAACCGGAGCAGTTTCCCGAAAAGGTTTGTTTTCGGAGCCGGAACTGCATCTTACCAGTCGGAAGGAGCGGCATA TATGGACGGCAAGGGCCCAAATGTATGGGATAACTTCACCAGGGAGCACCGAGATAAAATATGGGACCATAGTAACGGCGATGTTGCAGATGATTTCTAC CACCGATATGCGGAGGACATCAAGCTAATGAAAAAGATGGGATTGGACTCCTTTCGATTCTCCATCTCCTGGGCTAGAATTTTGCCACAGGGAAAAGTGA GCGGCGGGGTGAATCCAAAAGGAGTGAAATTCTACAATAGGCTAATCGACGACCTCCTAGCCAATGGAATCAAGCCATTTGTCACGTTGTTCCATTGGGA TCTCCCTAATGCACTTGAAGCCGACTACTCTGGCTTCCTCAGCTCCAGGGTCGTGGACGACTTCCGGGAGTACGCGGACCTGTGCTTCAAGGAATTCGGG GACAGGGTAAAGCATTGGTGCACCCTCAACGAGCCTTATACTTACAGCGTCAACGGCTACAACGGCGGTACGATGACCCCAGGTCGATGCTCTCGCTATG CCGGGAATTGCACTGTTGGGAATTCGGCCACTGAGCCCTACATTGTCGCTCATAATTTGCTCCTTTCCCATGCCGCCGCCGTCCGACTTTACAAGGCCAA ATATCAAGCCACCCAAAAGGGAGAAATAGGGATCACCATAGTGACCAACTGGTTCATACCGAAATCGCCGAAATCAGTGGCCGATCAGGAAGCTGCAAAC AGGGCTGTTGATTTCATGTTCGGGTGGTTTGCTCATCCAGTCACATATGGAGAATACCCAGCAAGCATGAGGAAGCTTGTTGGCCACAGACTCCCCAAAT TCAGTGCACAACAGTCGAAGATGTTGACCGGGTCGTTGGACTTCATGGGGGTCAATTACTACACCACAAACTTCGCCGCCGACAATCCTGTTCCTCACGG TCCCAACACCAGTTACTCTATCGACTCCCAAGTTCTTTTTACAACTTCCAAGGCTGGAGTTCCAATCGGTACGCCGACAGGATTGAATTGGCTCTTCATC TATCCAAGGGGAATTCATTCCCTAATGTTGCACGTAAGGGATAAGTACAAGAACCCACCAATTTACATCACTGAAAATGGTCTGGCAGATGCTAGCAACG ACACATTACCCAGAAGCGCCTTCATCAAGGATGGGATGAGGATTAAGTACTTGCATTTACATTTGCAGAACCTTCTGATGGCTCTCAAGGATGGAGCAAA TGTAAAAGGGTATTATGCGTGGTCATTGTTCGACGATTTCGAGTGGGATGCTGGCTACACGGTGAAGTTCGGAATGATATATGTCGATTTTAAGGACAAT CTCAAGAGATACCTCAAGTATTCTGCCTACTGGTACAAGATGTTCTTGTTGCACTAG
AA sequence Show only first row Show all	>Lus10019531 pacid=23181474 polypeptide=Lus10019531 locus=Lus10019531.g ID=Lus10019531.BGIv1.0 annot-version=v1.0 MGYNRPLVIGLAVIVVMAAVAAGLSAEAATPPIRRQHITMSFNRSSFPKRFVFGAGTASYQSEGAAYMDGKGPNVWDNFTREHRDKIWDHSNGDVADDFY HRYAEDIKLMKKMGLDSFRFSISWARILPQGKVSGGVNPKGVKFYNRLIDDLLANGIKPFVTLFHWDLPNALEADYSGFLSSRVVDDFREYADLCFKEFG DRVKHWCTLNEPYTYSVNGYNGGTMTPGRCSRYAGNCTVGNSATEPYIVAHNLLLSHAAAVRLYKAKYQATQKGEIGITIVTNWFIPKSPKSVADQEAAN RAVDFMFGWFAHPVTYGEYPASMRKLVGHRLPKFSAQQSKMLTGSLDFMGVNYYTTNFAADNPVPHGPNTSYSIDSQVLFTTSKAGVPIGTPTGLNWLFI YPRGIHSLMLHVRDKYKNPPIYITENGLADASNDTLPRSAFIKDGMRIKYLHLHLQNLLMALKDGANVKGYYAWSLFDDFEWDAGYTVKFGMIYVDFKDN LKRYLKYSAYWYKMFLLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	0	1
					Lus10005397 [exp]	3.7	0.9239
					Lus10026715 [exp]	5.2	0.9209
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	6.8	0.9237
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10025797 [exp]	7.7	0.8649
AT2G39725			LYR family of Fe/S cluster bio...		Lus10035952 [exp]	9.4	0.9079
AT2G38300	GARP		myb-like HTH transcriptional r...		Lus10002207 [exp]	11.8	0.9192
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	11.8	0.9197
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10011547 [exp]	12.8	0.8967
AT3G07570			Cytochrome b561/ferric reducta...		Lus10016080 [exp]	13.6	0.9153
AT5G14240			Thioredoxin superfamily protei...		Lus10014596 [exp]	14.1	0.8523

Compare expression of checked genes

Lus10019531 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.