Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22510 911 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT1G56560 768 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 754 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 748 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT4G09510 607 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G35580 605 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT4G34860 597 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT1G22650 593 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G72000 584 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043375 [exp] 1179 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10017095 [exp] 774 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10037817 [exp] 771 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10010900 [exp] 769 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10031431 [exp] 769 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10033144 [exp] 607 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 605 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 600 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Lus10042390 [exp] 597 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186500 [exp] 924 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G024100 [exp] 915 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 899 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.008G101500 [exp] 778 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.013G006600 [exp] 764 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.005G010800 [exp] 762 / 0 AT1G56560 946 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.004G167500 [exp] 600 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 599 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.013G110800 [exp] 595 / 0 AT4G09510 992 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) Potri.005G239400 [exp] 593 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10019532 pacid=23181472 polypeptide=Lus10019532 locus=Lus10019532.g ID=Lus10019532.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCTGAAGCGATTTTCCGAACTGGGTTGCCGCCGCGGCTTCATCATTTTGACCCCTCGCGTAATTTTTCAAGCTCGTTCCTTTCTCTCAAGT CTGGTGTTAGCTGTTCCAGAAAAAGTAGGAGAAATCATGGCTCGAAAACCTTCGCGAAATGCATTAACCTCCATGCACGCTGTGGAATGGATCCTTTTTC CTTTAGGAGGATTGAATCCACAGGAAGAGTCAATCAGACCAGATGCAGATGCCAAAAGGCAGAAGCTTTTGGTGTACAGAATGTTCAGGATTATGCACTG CTTGATCATTTGAAACCCGAAAATGGGGACGTTGCAGGCGCTGCAAATGGTGCTGCGGTGGATGGAAATGGAGTGACTAAAGATGGAAGACCCAAGAAGG TTTCTTCAAATCCCATTGAGAATGAAGCTTGGGACTTGCTGCGTGCTTCTGTTGTTTACTATTGTGGCAACCCAATTGGAACCATTGCTGCTAATGATCC AAACAGCAGCAGTGTTCTCAATTATGATCAAGTCTTTATTCGTGACTTCATTCCTTCTGGCATTGCGTTCCTTTTGAAAGGAGAGTATGATATCGTCCGC AACTTCATTCTCTACACTTTGCAATTGCAGAGTTGGGAGAAAACCATGGATTGTTATAGTCCTGGTCAAGGGCTCATGCCGGCTAGTTTCAAGGTCCGAA CTGTGCCTCTAGAAGGCGATGAGGATGCCAGTGAAGAAGTCTTGGATCCAGATTTTGGTGAAGCAGCAATTGGACGTGTTGCACCAGTTGACTCGGGATT GTGGTGGATTATCCTCTTGAGAGCTTATGGAAAATGCTCCGGGGATCTTTCAGTCCAAGAGAGAGTTGATGTCCAAACTGGGATCAAAATGATTTTAAAA CTGTGTCTTGCTGACGGTTTTGATATGTTTCCGACTTTGTTGGTCACTGATGGCTCTTGTATGATTGATCGGCGCATGGGAATTCATGGGCATCCGTTGG AGATTCAGGCCCTCTTTTATTCAGCTCTACTAAGCGCACGTGAGATGCTTGCTCCCGAGGATGGAACAGCTGATCTTATCAGGGTCCTCAACAACCGTCT AGTTGCATTGTCTTTCCACATCAGGGAGTATTATTGGATCGACATGAAAAAACTGAACGAGATATACCGTTACAAGACAGAGGAGTACTCTTATGATGCC GTTAACAAGTTTAACATATACCCAGACCAGATTCCTCCCTGGTTGGTGGAATTTATGCCCAATAAAGGAGGCTATTTGATTGGAAACCTGCAGCCAGCTC ACATGGACTTCCGTTTCTTTTCACTGGGAAACTTGTGGTCCATAGTAAGTAGTCTTGCAACCATGGACCAGTCTCATGCCATATTGGATCTTTATGAAGC AAAATGGAACGATTTAGTTGCGGAGATGCCATTCAAAATATGCTACCCGGCTCTCGAAGAACAGGAATGGCGGATTATCACAGGCAGCGACCCGAAGAAT ACACCGTGGTCTTACCATAATGGTGGTTCTTGGCCAACTTTGCTTTGGCAGCTGACTGTAGCATGCATCAAGATGAACAGACCAGAGATTGCACAAAGAG CAGTTGAGCTTGTTGAGAAGAGGATCTCGAGAGACAACTGGCCGGAATATTACGATACCAAGAGAGGGAGATTCATTGGCAAGCAATCTAGGCTGTTCCA AACATGGTCGATTGCGGGATATCTGGTGTCAAAGCTCCTGCTCGACAACCCAGATAAAGCAAAGATCCTGATGAATGAAGAGGATTCAGAGCTTGTAAAT GCATTCTCGTGCATGATCGGTGCCAACCCAAGGAGACAACGTGGAAAGAAAGCAGTTAAACAGCCCTTCATTGTATGA
AA sequence Show only first row Show all	>Lus10019532 pacid=23181472 polypeptide=Lus10019532 locus=Lus10019532.g ID=Lus10019532.BGIv1.0 annot-version=v1.0 MASAEAIFRTGLPPRLHHFDPSRNFSSSFLSLKSGVSCSRKSRRNHGSKTFAKCINLHARCGMDPFSFRRIESTGRVNQTRCRCQKAEAFGVQNVQDYAL LDHLKPENGDVAGAANGAAVDGNGVTKDGRPKKVSSNPIENEAWDLLRASVVYYCGNPIGTIAANDPNSSSVLNYDQVFIRDFIPSGIAFLLKGEYDIVR NFILYTLQLQSWEKTMDCYSPGQGLMPASFKVRTVPLEGDEDASEEVLDPDFGEAAIGRVAPVDSGLWWIILLRAYGKCSGDLSVQERVDVQTGIKMILK LCLADGFDMFPTLLVTDGSCMIDRRMGIHGHPLEIQALFYSALLSAREMLAPEDGTADLIRVLNNRLVALSFHIREYYWIDMKKLNEIYRYKTEEYSYDA VNKFNIYPDQIPPWLVEFMPNKGGYLIGNLQPAHMDFRFFSLGNLWSIVSSLATMDQSHAILDLYEAKWNDLVAEMPFKICYPALEEQEWRIITGSDPKN TPWSYHNGGSWPTLLWQLTVACIKMNRPEIAQRAVELVEKRISRDNWPEYYDTKRGRFIGKQSRLFQTWSIAGYLVSKLLLDNPDKAKILMNEEDSELVN AFSCMIGANPRRQRGKKAVKQPFIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10019532 [exp]	0	1
AT2G31890		ATRAP	RAP (.1)		Lus10033769 [exp]	6.5	0.8851
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	13.3	0.8834
AT3G56940		CRD1, CHL27, AC...	COPPER RESPONSE DEFECT 1, dica...		Lus10035398 [exp]	16.0	0.8825
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	18.1	0.8752
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	18.1	0.8827
AT4G37200		HCF164	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10022477 [exp]	19.5	0.8814
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10000110 [exp]	21.1	0.8806
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	24.4	0.8724
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	30.6	0.8726
AT1G74640			alpha/beta-Hydrolases superfam...		Lus10002055 [exp]	32.1	0.8157

Compare expression of checked genes

Lus10019532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.