Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44620 254 / 2e-83 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) AT2G27710 88 / 2e-21 60S acidic ribosomal protein family (.1.2.3.4) AT2G27720 85 / 4e-20 60S acidic ribosomal protein family (.1.2.3) AT3G44590 84 / 1e-19 60S acidic ribosomal protein family (.1.2) AT3G28500 79 / 8e-18 60S acidic ribosomal protein family (.1) AT5G40040 76 / 1e-16 60S acidic ribosomal protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043376 [exp] 350 / 4e-122 AT3G44620 254 / 1e-86 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Lus10043377 [exp] 124 / 7e-34 AT2G27710 102 / 8e-29 60S acidic ribosomal protein family (.1.2.3.4) Lus10020575 [exp] 112 / 4e-30 AT3G44590 100 / 9e-29 60S acidic ribosomal protein family (.1.2) Lus10006270 [exp] 114 / 3e-29 AT2G27710 100 / 9e-27 60S acidic ribosomal protein family (.1.2.3.4) Lus10014070 [exp] 104 / 3e-27 AT2G27710 92 / 1e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10019846 [exp] 103 / 5e-27 AT2G27710 92 / 2e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10026714 [exp] 103 / 6e-27 AT3G44590 96 / 6e-27 60S acidic ribosomal protein family (.1.2) Lus10026712 [exp] 103 / 2e-25 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146800 [exp] 290 / 3e-97 AT3G44620 281 / 4e-96 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Potri.004G186400 [exp] 287 / 2e-96 AT3G44620 287 / 2e-98 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Potri.009G146200 [exp] 104 / 3e-27 AT2G27710 89 / 2e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.004G185800 [exp] 103 / 5e-27 AT2G27710 89 / 4e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.010G236400 [exp] 89 / 2e-21 AT2G27710 90 / 1e-24 60S acidic ribosomal protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF01451 [flax] [poplar] LMWPc Low molecular weight phosphotyrosine protein phosphatase CL0031 [flax] [poplar] PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10019533 pacid=23181475 polypeptide=Lus10019533 locus=Lus10019533.g ID=Lus10019533.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTCGCAGCTTACTTGCTCGCCGTTCTGGGAGGCAACACCACCCCCACCGCCGATGACTTGAAGTCTATCCTCGGATGCGTTGGTGCTGAGG CCGATGACGACAGGATTGAATTGCTATTGTCTCAAGTGAAAGGAAGAGACACCACCGAGCTGATAGCAGCTGGTATGGAGAAGTTGGCCTCTGTGCCTTC AGGAGGCGGTGGTGTTGCAGTTGCTGCATCAGCTGCCCCTGCTGCCGGTGGTGCTGCTGCACCAGCCGCCGAGGCAAAGAAGGAAGAGAAAGTGGAGGAG AAAGAGGAGTCCGATGATATACAACAACGGTGGAGCAGAAGCGTAGAGATGATGACGTCAGCAGCATCCTCCTCCGCCTGGTCAACAAAAACTCCCAGGT GGCCATGGATTTCTCCAAATTCACAATTCTGCCACTCGGCTCCCACTACTCTCCAATCTCCATTGATCAAACCCCCACTCCTACTTCCTCCTCGTTTTCG CCTCTCTCTCATCAGTCTTAATACTCCCCATCGCACTTCCCGCTTCACCATTGCTTCTTCAATGGCGGACGCCGATACCTCAGCCACCACCACCAAACCC TTTTCCGTTCTCTTCGTCTGCCTCGGCAACATCTGCAGGAGCCCAGCTGCGGAAGCCGTCTTCAGGGGTATTGTTCAGGACAAGGGATATGGTTCCGAGT TCAACATCGACTCTGCCGGCACCATCAATTACCATGAGGGCAATCCGGCTGATGGAAGAATGAGAGGTGCTGCTAAGAATCGCGGGATCCTGATAACATC CATTTCCAGGCCAATTCGACCTTCTGACTTCATCGACTTCGATATCATCCTTGCTATGGACAGGCAGAATAGAGAGGATATATTGGGTGCTTTGGAGAGG TGGAAGTTCAAGGAAACGCTCCCTGAGGATGCACATAACAAGGTTAAGTTGATGTGTTCCTACTGTAAGAAGCATGAGGAGAGTGAAGTCCCCGATCCTT ACTATGGTGGACACCAAGGTTTCGAAAAGGTTCTGGATATTCTTGAAGATGCCTGTGAATCATTGTTGGACAGCATCTTGGCTGAGAACAGTCATATTTG CAGTTCGTGA
AA sequence Show only first row Show all	>Lus10019533 pacid=23181475 polypeptide=Lus10019533 locus=Lus10019533.g ID=Lus10019533.BGIv1.0 annot-version=v1.0 MKVVAAYLLAVLGGNTTPTADDLKSILGCVGAEADDDRIELLLSQVKGRDTTELIAAGMEKLASVPSGGGGVAVAASAAPAAGGAAAPAAEAKKEEKVEE KEESDDIQQRWSRSVEMMTSAASSSAWSTKTPRWPWISPNSQFCHSAPTTLQSPLIKPPLLLPPRFRLSLISLNTPHRTSRFTIASSMADADTSATTTKP FSVLFVCLGNICRSPAAEAVFRGIVQDKGYGSEFNIDSAGTINYHEGNPADGRMRGAAKNRGILITSISRPIRPSDFIDFDIILAMDRQNREDILGALER WKFKETLPEDAHNKVKLMCSYCKKHEESEVPDPYYGGHQGFEKVLDILEDACESLLDSILAENSHICSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44620			protein tyrosine phosphatases;...		Lus10019533 [exp]	0	1
AT3G12150			unknown protein		Lus10035501 [exp]	2.2	0.8752
AT5G18380			Ribosomal protein S5 domain 2-...		Lus10012599 [exp]	3.5	0.8750
AT1G16790			ribosomal protein-related (.1)		Lus10034801 [exp]	3.6	0.8338
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10007376 [exp]	4.6	0.8731
AT2G31610			Ribosomal protein S3 family pr...		Lus10033442 [exp]	4.9	0.8723
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	6.3	0.8675
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	6.5	0.8598
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10004648 [exp]	7.9	0.8478
AT1G61570		TIM13	translocase of the inner mitoc...		Lus10017352 [exp]	7.9	0.8461
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10016431 [exp]	11.3	0.8476

Compare expression of checked genes

Lus10019533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.