Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27690 209 / 3e-66 CYP94C1 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) AT5G63450 165 / 2e-49 CYP94B1 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) AT3G48520 157 / 2e-46 CYP94B3 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) AT3G01900 152 / 1e-44 CYP94B2 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) AT3G56630 150 / 5e-44 CYP94D2 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) AT1G24540 151 / 6e-44 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13140 150 / 6e-44 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT5G08250 147 / 9e-43 Cytochrome P450 superfamily protein (.1) AT5G23190 147 / 2e-42 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT1G34540 146 / 2e-42 CYP94D1 "cytochrome P450, family 94, subfamily D, polypeptide 1", cytochrome P450, family 94, subfamily D, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043378 [exp] 310 / 2e-108 AT2G27690 341 / 1e-115 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Lus10033853 [exp] 163 / 1e-48 AT5G63450 474 / 7e-164 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014742 [exp] 161 / 8e-48 AT5G63450 451 / 8e-155 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10014741 [exp] 160 / 2e-47 AT5G63450 461 / 1e-158 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10033852 [exp] 154 / 7e-45 AT5G63450 457 / 4e-157 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Lus10036024 [exp] 154 / 8e-45 AT3G56630 380 / 3e-127 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Lus10041562 [exp] 151 / 6e-44 AT3G01900 597 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10012531 [exp] 150 / 2e-43 AT3G01900 592 / 0.0 "cytochrome P450, family 94, subfamily B, polypeptide 2", cytochrome P450, family 94, subfamily B, polypeptide 2 (.1) Lus10037999 [exp] 150 / 3e-43 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G145400 [exp] 218 / 8e-70 AT2G27690 622 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.004G185300 [exp] 209 / 3e-66 AT2G27690 604 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.010G236700 [exp] 207 / 2e-65 AT2G27690 576 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.013G075600 [exp] 199 / 2e-62 AT2G27690 585 / 0.0 "cytochrome P450, family 94, subfamily C, polypeptide 1", cytochrome P450, family 94, subfamily C, polypeptide 1 (.1) Potri.002G042200 [exp] 167 / 4e-50 AT5G63450 442 / 3e-151 "cytochrome P450, family 94, subfamily B, polypeptide 1", cytochrome P450, family 94, subfamily B, polypeptide 1 (.1) Potri.012G096800 [exp] 167 / 4e-50 AT3G48520 611 / 0.0 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.002G042100 [exp] 164 / 5e-49 AT3G48520 451 / 1e-154 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.016G031850 [exp] 154 / 5e-49 AT3G56630 221 / 4e-71 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1) Potri.005G220900 [exp] 163 / 2e-48 AT3G48520 414 / 2e-140 cytochrome P450, family 94, subfamily B, polypeptide 3 (.1) Potri.001G277305 [exp] 155 / 3e-48 AT3G56630 225 / 4e-71 "cytochrome P450, family 94, subfamily D, polypeptide 2", cytochrome P450, family 94, subfamily D, polypeptide 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10019534 pacid=23181581 polypeptide=Lus10019534 locus=Lus10019534.g ID=Lus10019534.BGIv1.0 annot-version=v1.0 ATGAGGGAAATGCATTACCTGACAGCCGCCGTGTATGAGAGTCTGCGGCTGTTTCCACCGGTACAGTTCGATTCCAAGTTCGCGTTAAACGACGACGTAT TGCCGGACGGGACGGTGGTGAGAAAGGGGGATAGGGTGACGTACCACCCGTACGCGATGGGGAGGATGGAGTCCATATGGGGAGTGGACTGCCTGGAGTT CAAACCGGAGAGGTGGCTGAACGAGGAAGGCAGGTTTGTCGGGAGGAGCCAGTTCGAGTACCCGGTTTTCCAGGGTGGCCACAGGGTTTGTTTGGGGAAA GAGATGGCGATTGTGGAGATGAAGAGCGTTATTTTGGCGGTGGTTACTCGGTTCAATGTCCGGGTGGCGGATCCGGGTCAGGAACAGATGTTTTCTCCCG GTTTGACTGCTACCGTCAGGGGGGGCCTGCATGTTGTCGTTGAGAGGAGAGAATGA
AA sequence Show only first row Show all	>Lus10019534 pacid=23181581 polypeptide=Lus10019534 locus=Lus10019534.g ID=Lus10019534.BGIv1.0 annot-version=v1.0 MREMHYLTAAVYESLRLFPPVQFDSKFALNDDVLPDGTVVRKGDRVTYHPYAMGRMESIWGVDCLEFKPERWLNEEGRFVGRSQFEYPVFQGGHRVCLGK EMAIVEMKSVILAVVTRFNVRVADPGQEQMFSPGLTATVRGGLHVVVERRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Lus10019534 [exp]	0	1
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	2.4	0.8738
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	3.0	0.8373
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	3.5	0.8338
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002770 [exp]	4.0	0.7901
					Lus10020461 [exp]	5.7	0.8579
AT5G41720			unknown protein		Lus10006473 [exp]	7.4	0.8171
					Lus10028460 [exp]	7.7	0.8057
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10024020 [exp]	8.2	0.7892
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	9.8	0.7492
					Lus10036058 [exp]	16.2	0.7638

Compare expression of checked genes

Lus10019534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.