Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16650 568 / 0 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 547 / 0 PRORP3 proteinaceous RNase P 3 (.1) AT2G32230 377 / 2e-124 PRORP1 proteinaceous RNase P 1 (.1) AT5G60430 121 / 3e-32 drug transmembrane transporters;antiporters (.1.2) AT5G15010 42 / 0.0008 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043379 [exp] 600 / 0 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10039049 [exp] 369 / 2e-121 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 359 / 2e-117 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 336 / 2e-109 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10043223 [exp] 342 / 6e-108 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10014928 [exp] 278 / 4e-87 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10034924 [exp] 51 / 2e-06 AT5G21222 599 / 0.0 protein kinase family protein (.1) Lus10023650 [exp] 50 / 4e-06 AT5G21222 623 / 0.0 protein kinase family protein (.1) Lus10042529 [exp] 47 / 6e-05 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G185200 [exp] 654 / 0 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.009G145200 [exp] 647 / 0 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.017G144900 [exp] 399 / 6e-133 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G074100 [exp] 391 / 1e-129 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.006G160300 [exp] 330 / 5e-103 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.001G236800 [exp] 49 / 1e-05 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 44 / 0.0004 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0280 [flax] [poplar] PIN PF11977 [flax] [poplar] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Lus10019535 pacid=23181508 polypeptide=Lus10019535 locus=Lus10019535.g ID=Lus10019535.BGIv1.0 annot-version=v1.0 ATGGCGGCTGCCCAGCGTAAGAAGAAGCCGAAGAACCAATCCCTAGAAGCTCAATTCAACTATAACCTCAACTCCCACTCCAAATCCAAAGACCTCCGCT CCGCCCTCTCCCTGTACGACTCAGCCTCCGGAGACACCTCCTTCCGCCTCAGCCAGCACCATTTCAACACCCTTCTGTACCTCTGCTCCGTCTCCCTCGC CACCGACGACAACCCTTCAACCAAAGAACTCGCCTTGGAACATGGCTTCCGGATATACGATCGCATGGTCTCCACCGGTATTAAACCCAACGAGGCCTCC ATTACAGCCGTCGCTCGCTTGGCCGCCGCGAGAAAGGATGGCGACTACGCTTTCGAATTGGTTAAGACCATGATCTCCGAACAAAATTCACTGCCGAAGC TGCGGACTTACGATCCTGCTTTGTTCTGTTTCTGCGATAAAATGGAGTCGGAGAAGGCATTTGAGGTTGAGGAACACATGGGAAGATACGGAATTGCATT GGAGGAGGCCGAGCTCGCGGCGTTGCTGAAGGTGAGTTCGGAGACTGGGAAAGAGGGTAAAGTTTATGAGTATTTGCAGAAATTGAGGAACACTCTTGGA TGTGTGAGGGAACAGACAGCTGATGTCATACGGAATTGGTTTGAGCGGTTCGACGGTAATGGCAGCGAATTGGATTTGGGTTTGATCAGAGAAGCAATGG CTAGGAATGGAGGAGGGTGGCATGGGTTGGGATGGATTGGGAAAGGTGGATGGATTGTCAATAAAGGGAAAGTTAGTGATGATGGCAAGTGTTTCTGTTG TGGTGAGCAGTTAGCTTGTGTTGATATTGCTGGTGAAGAGACTGAGAGGTTTGCTGAATCGGTGGCTGGTTTGGCTATGGACAGAGAGGTCAAGGCTAAT TTCAGTGAATTTCAGGATTGGCTGGAGAAGCATCAAGCTAATTATGATGCTATAGTAGATGCAGCGAATGTGGGTCTTTACCAGCAGAATTTTGTGGAAG GGGGATTCAGTGTCTCTCAGGTTGTGAATTTTAGCCAAGGAAAGCAGCTTCATGCTGTAGTGACAGAATTATATAATAGAAGTGGGAAGAAATGGCCCCT TATAGTATTGCATAGCAAGCGTGTTCGAGCTCTCCTTGAAAATGCTTCCCACAGAAAGTTCATTGAAGAGTGGAAAGAGAACGGTGCTCTATATACCACC CCACATGGTTCTAATGATGATTGGTATTGGCTATACGCTGCTGTCAAACTCAGGTGCTTGCTAGTTACAAATGATGAAATGCGAGATCACATTTTTGAAC TCCTAGGAACCAGCTTCTTCCTCAAATGGAAAGAAAGGCATCAAGCGAAGTATACTTTTGCGAAGGGTAACTTGATTCTTCAAATGCCAGCCCCATTTTC TGTGGTCATCCAGGAATCAGAGAAAGGATCATGGCATGTACCTATCGCAGGCAATGAGAGTTGCGAGCCTGCACAAAGTTGGCTCTGCATAACACGGACT GGTTCTGCAGACAAAACTTGCAACGAACCCGTAACCATGGAAGCTTCTGAAAATGGCCATGATAAGTGCTGCAATGGAGGAGTTTCGAGATCAGAAAGCG TCCGAACCAGTGAAGTTAGTGACTATAGGACCGCTGCAACCATAACGGGGAAAAGGAAAGAGAGATCCTAA
AA sequence Show only first row Show all	>Lus10019535 pacid=23181508 polypeptide=Lus10019535 locus=Lus10019535.g ID=Lus10019535.BGIv1.0 annot-version=v1.0 MAAAQRKKKPKNQSLEAQFNYNLNSHSKSKDLRSALSLYDSASGDTSFRLSQHHFNTLLYLCSVSLATDDNPSTKELALEHGFRIYDRMVSTGIKPNEAS ITAVARLAAARKDGDYAFELVKTMISEQNSLPKLRTYDPALFCFCDKMESEKAFEVEEHMGRYGIALEEAELAALLKVSSETGKEGKVYEYLQKLRNTLG CVREQTADVIRNWFERFDGNGSELDLGLIREAMARNGGGWHGLGWIGKGGWIVNKGKVSDDGKCFCCGEQLACVDIAGEETERFAESVAGLAMDREVKAN FSEFQDWLEKHQANYDAIVDAANVGLYQQNFVEGGFSVSQVVNFSQGKQLHAVVTELYNRSGKKWPLIVLHSKRVRALLENASHRKFIEEWKENGALYTT PHGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFELLGTSFFLKWKERHQAKYTFAKGNLILQMPAPFSVVIQESEKGSWHVPIAGNESCEPAQSWLCITRT GSADKTCNEPVTMEASENGHDKCCNGGVSRSESVRTSEVSDYRTAATITGKRKERS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21900		PRORP3	proteinaceous RNase P 3 (.1)		Lus10019535 [exp]	0	1
AT4G12540			unknown protein		Lus10025820 [exp]	3.7	0.9163
AT1G19880			Regulator of chromosome conden...		Lus10033168 [exp]	8.4	0.9183
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	11.1	0.9102
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10035061 [exp]	13.0	0.9052
AT3G03340		UNE6	unfertilized embryo sac 6, LUC...		Lus10020225 [exp]	14.7	0.8918
AT1G69070			unknown protein		Lus10036815 [exp]	15.7	0.9070
AT5G39550		ORTH1, VIM3	VARIANT IN METHYLATION 3, ORTH...		Lus10039127 [exp]	16.0	0.9098
AT5G35910			Polynucleotidyl transferase, r...		Lus10005691 [exp]	16.5	0.9152
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	20.6	0.8927
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	23.9	0.8909

Compare expression of checked genes

Lus10019535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.