Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80730 53 / 3e-08 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G57520 48 / 6e-07 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G27880 49 / 1e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 47 / 2e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 47 / 3e-06 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT1G68360 45 / 1e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 45 / 1e-05 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G67030 44 / 3e-05 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT5G61470 44 / 5e-05 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G10970 44 / 5e-05 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043380 [exp] 252 / 5e-84 AT1G24625 53 / 2e-08 zinc finger protein 7 (.1) Lus10026121 [exp] 48 / 2e-06 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10008698 [exp] 48 / 2e-06 AT1G80730 86 / 2e-19 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10026597 [exp] 46 / 5e-06 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10041160 [exp] 46 / 5e-06 AT5G43540 69 / 8e-15 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10030764 [exp] 46 / 1e-05 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10013243 [exp] 46 / 1e-05 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10006960 [exp] 45 / 1e-05 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1) Lus10029204 [exp] 45 / 2e-05 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G028100 [exp] 53 / 2e-08 AT5G10970 78 / 2e-17 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G192000 [exp] 50 / 5e-07 AT5G25160 82 / 4e-18 zinc finger protein 3 (.1) Potri.018G094300 [exp] 49 / 5e-07 AT5G57520 108 / 9e-31 zinc finger protein 2 (.1) Potri.010G102700 [exp] 49 / 1e-06 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.018G123800 [exp] 48 / 2e-06 AT5G25160 92 / 4e-22 zinc finger protein 3 (.1) Potri.003G180600 [exp] 48 / 3e-06 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 47 / 3e-06 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G138000 [exp] 47 / 4e-06 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.008G193400 [exp] 47 / 4e-06 AT1G10480 69 / 9e-14 zinc finger protein 5 (.1) Potri.006G063800 [exp] 47 / 5e-06 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019536 pacid=23181606 polypeptide=Lus10019536 locus=Lus10019536.g ID=Lus10019536.BGIv1.0 annot-version=v1.0 ATGACAATGAATCAACAAAATCAATCCCGAGAAGCTGATATTCATCATGAATATGGTCTTTCGATCATCCATTCCTTGGGTAGGTCTGTTCAGCGACATC CCAATGGTGTCGCGAATACTAAACCTCCCAATTCGGAGCTCAACTTGACGAAGGGCTACGGTGAAATCAACAATGATGTGTCCCATTTTCGTATCATTCC AGATAGGCGTACATTTGCTTGCTACTTCTGCACCAAACAGTTCAAAAACGGTCAAGCCTTGGGTGGGCACCAAAGGGCCCATACACTAGAACGAGCGTTT CAAAATTGGCAGCAGATTAGGTTCAGGTCGCTGCAATTATCACCAACTGTTATGTTCTATAACCGGTTTGGTGTCAGGGAGTTGTTTGGCAGCTGCTATG GAGATGGTGTCCCTCTGAGGAATCCCTTGGGTGTTAATGCTCTCTCTTCAATGATCCATAAGCCGGTTGGATCTGTTGTTAGTGCTGCTGGATACAGGGC TCGTGGATTTGGAAGATCTTTTCCCGTAACACCTGGCCCTATCTTGAGGCCTTGGACTTATTCTCAGATGATCAATCCTATAAATAACAATGGTGCCAGT TCGTCATCTAACCAAGAGATCATCGATTTAATGGCGCATGATGGAGCTTATGGAACACCTCTAGAACTTCATCCCGTAAACAGCTCTAGAGTCGATACTG CTAAACCAAACATGCGAGAATTCTGA
AA sequence Show only first row Show all	>Lus10019536 pacid=23181606 polypeptide=Lus10019536 locus=Lus10019536.g ID=Lus10019536.BGIv1.0 annot-version=v1.0 MTMNQQNQSREADIHHEYGLSIIHSLGRSVQRHPNGVANTKPPNSELNLTKGYGEINNDVSHFRIIPDRRTFACYFCTKQFKNGQALGGHQRAHTLERAF QNWQQIRFRSLQLSPTVMFYNRFGVRELFGSCYGDGVPLRNPLGVNALSSMIHKPVGSVVSAAGYRARGFGRSFPVTPGPILRPWTYSQMINPINNNGAS SSSNQEIIDLMAHDGAYGTPLELHPVNSSRVDTAKPNMREF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	0	1
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	2.6	0.9781
AT5G01630		BRCA2(V), ATBRC...	BRCA2-like B (.1)		Lus10012228 [exp]	3.5	0.9486
					Lus10015828 [exp]	5.7	0.9651
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	6.7	0.9648
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	7.1	0.9508
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	8.2	0.9625
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	10.5	0.9589
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	11.6	0.9529
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10036068 [exp]	11.9	0.8757
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	12.0	0.9546

Compare expression of checked genes

Lus10019536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.