Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) AT3G48820 51 / 7e-07 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08660 50 / 2e-06 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043382 [exp] 428 / 1e-151 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10032547 [exp] 57 / 1e-08 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10043193 [exp] 55 / 7e-08 AT3G48820 697 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10031992 [exp] 52 / 4e-07 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 52 / 5e-07 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184200 [exp] 592 / 0 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.009G144000 [exp] 536 / 0 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.014G145400 [exp] 52 / 4e-07 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.015G104100 [exp] 50 / 1e-06 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [flax] [poplar] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10019538 pacid=23181481 polypeptide=Lus10019538 locus=Lus10019538.g ID=Lus10019538.BGIv1.0 annot-version=v1.0 ATGAAAAGGTCGGTGCGTCCTGTCTTTACTATTCTGCTCTTCGTTCTCTTTGCTCTTACTCTCAGCTGCCGAATTTTGATCCGCCGGACTTTGTTCGCCT CACTCGACCTGCACAACGATGTAATTTTCAATTCCGAAAATGCCGCCGCTACTACCATCAACTCCACGCTGTTGAGATACGCCGCCGTGGATTTGAGCGA GTCCAAGACTAAGCAAGAGATTGAGCAGTTGTTGGAAGGAAATTTCGCCAGTCGTGGAAGGTACAGGACCTTCACTACTTGGAGAAGGTTCAGTAGCCAT GACCCGCAAGCTAGGTCGTCCCGTGGCATTCCTGTAATGCTCAGATCTCCTGAATTCTACCGCTACTGGCTCAAATTCCGCCAGGTCTTGCATTATTGGG CTCGGAACCGGAGGTATCAGCCAGAAGTGATGAACGACTTGGTGGCGCTTGTCAAGATTCCGATTCAGAAGCAGAAAGGATCGGCCGCCGCTGGTTCTAA ACGGTATGCTTCTTGTGCAGTGGTTGGGAACAGTGGGATCTTGCTGCAGAAGGAGTACGGGAAGCTTATCGATAGCCACGAGATGGTGATACGATTGAAC AATGCCAATACCGACAAATTCGAGAAGAACGTCGGGTCGAAAACCCATCTATCGTTTGTGAATAGCAACATACTGCATCTTTGTGCTAGAAGGCAAGGGT GCTTTTGCCATCCGTACGGTCCCGATGTCCCTATTGCTATGTACATCTGCCAACCGGGTCATTTCTTGGACTACATACTCTGCAACTCGTCTCACAAGGC ACCATTGATCGTCACAGATGCTAGATTCGACGTTTTGTGTACGAGGATCGTAAAGTATTACTCTTTGAGAAGGTTTGCAGCCGAAACTGGGAAGCCATTA GAAGAATGGAGTTCTAGCCATGATGGATCCATGTTCCATTACTCTTCTGGTTTGCAGGCAGTGATGCTTGCTGCTGGGATTTGTGAGAAAGTCAACGTCT TTGGGTTTGGGAAGTCGGCTTCTGCAAAGCATCATTACCATACCAATCAGAAGGCTGAGCTTAGGTTGCATGACTACGCCGCGGAGTACGATTTCTACCA TGATTTGGTGCATAATCCAAAAGCCATACCTTTCGTCTCAGACAAGTTCAAGTTTCCTCCTGTGGTCATCTACCATTAA
AA sequence Show only first row Show all	>Lus10019538 pacid=23181481 polypeptide=Lus10019538 locus=Lus10019538.g ID=Lus10019538.BGIv1.0 annot-version=v1.0 MKRSVRPVFTILLFVLFALTLSCRILIRRTLFASLDLHNDVIFNSENAAATTINSTLLRYAAVDLSESKTKQEIEQLLEGNFASRGRYRTFTTWRRFSSH DPQARSSRGIPVMLRSPEFYRYWLKFRQVLHYWARNRRYQPEVMNDLVALVKIPIQKQKGSAAAGSKRYASCAVVGNSGILLQKEYGKLIDSHEMVIRLN NANTDKFEKNVGSKTHLSFVNSNILHLCARRQGCFCHPYGPDVPIAMYICQPGHFLDYILCNSSHKAPLIVTDARFDVLCTRIVKYYSLRRFAAETGKPL EEWSSSHDGSMFHYSSGLQAVMLAAGICEKVNVFGFGKSASAKHHYHTNQKAELRLHDYAAEYDFYHDLVHNPKAIPFVSDKFKFPPVVIYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	0	1
AT1G08280			Glycosyltransferase family 29 ...		Lus10043382 [exp]	1.4	0.9291
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022560 [exp]	2.8	0.9327
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	3.5	0.9263
AT1G02570			unknown protein		Lus10025023 [exp]	4.1	0.8974
AT5G57460			unknown protein		Lus10028963 [exp]	5.5	0.9246
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	6.1	0.8634
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	6.9	0.9258
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10025815 [exp]	8.4	0.8669
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	8.5	0.9133
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	8.5	0.9069

Compare expression of checked genes

Lus10019538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.