Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22470 924 / 0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) AT2G31320 304 / 3e-91 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT4G02390 150 / 4e-38 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043383 [exp] 1257 / 0 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10033871 [exp] 293 / 1e-86 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10007882 [exp] 148 / 1e-37 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10030363 [exp] 116 / 6e-27 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143900 [exp] 1012 / 0 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.004G184100 [exp] 509 / 3e-176 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.002G041300 [exp] 286 / 1e-84 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.014G128200 [exp] 162 / 4e-42 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.014G128000 [exp] 108 / 2e-24 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain CL0084 [flax] [poplar] ADP-ribosyl PF00644 [flax] [poplar] PARP Poly(ADP-ribose) polymerase catalytic domain CL0084 [flax] [poplar] PF02877 [flax] [poplar] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0084 [flax] [poplar] PF05406 [flax] [poplar] WGR WGR domain
Representative CDS sequence Show only first row Show all	>Lus10019539 pacid=23181569 polypeptide=Lus10019539 locus=Lus10019539.g ID=Lus10019539.BGIv1.0 annot-version=v1.0 ATGCTGAAGAAGTATCAGGATTCAAGCAGGCGGCCTAGCAGGGATTCAGCAAACCCTTTGAAGCCTTTGTCAGGAATGGTCATAGCTTTGTCAGGCCGTC TCTCAAGGACCCACCAAGAATGGAGGAAACTGATCGAGCAAAATGGAGGCAAAGTCTCTAATTCCGTCATGGGAGTTAGCTGCCTTGTTGCGACATCTGC AGAGCGAGATCGTGGTGGCTCTTCGAAGCATGCTGAAGCAGTTGAGCGCGGGATTCCAGTGGTGAGGGAAGAGTGGTTGGTGGATTGCATTGAGAAGCAA GAGCCTCAGCCATTGGAAGCATACGACATCATGTCCGACATTGCTGTGGACGGCAAAGGCATTCCATGGGAAAAACAGGATCCTAGCGATCAAGCTCTGG AAGCGCTCACGGCCGAACTGAAGCTTTACGGGAAGAGAGGAGTCCACAAGGACACCAAGCTTCTGGATCAAGGAGCAGCTATTCTTGAGAAAGATGGGAT CTTGTACAACTGTGCTTTCTTCCTCTGTGATCTCGGCAGGGGAATTAACGAGTTCTGTATTATGCAACTGATCACTATTGAAGATGGTAACTTGCACATG TACTACAAGAAAGGGAAGGTTGGAGATGATCCGAATGCGGAAGAGAGGCTAGAGGAGTGGGAAAGTGTGGATAGTGCTATTAAGGAGTTTGTGAACTTGT TTGAGGAGATCACTGGCAACGAGTTTGAGCCTTGGGAGAGGGAAAAGAAGTTTGAGAAGAAGAGGCTTAGCTTCTTCCCCATTGATATGGATGACGGAGT TGATGTGAGACATGGAGGGTTGGAGTTGAGGCAACTGGGAGCTGCAAGTCTACACAGCAGCCTGGAACCAAAGGTTGCAAATTTTATGAAATCCTTGTGC AGTCAGGAAATCTACAGGTATGCACTGATGGAGATGGATATGGACTCTCCGGACTTGCCGATCGGAATGCTCTCCGACGTCCATCTGAAAAGAGGGGAGG AAGCTCTTCTTCAATTTGTCCAGGCCGTAAAATCAGCCGAAGGAGCGAAAGGTTCGGGGAGAAACGAGGAGGCTGTCTGGTCTGACCATAGCCAGCGATG GTTCACGCTTATGCCTTCGACGAGGCCGTTTGTCTTCAAGGACTATAAATCACTTGCAGATAATGCTGCAGCTGGTTATGAGACGATACGGGACATCAAT GTGGCATCACGCATCATAGGAGACATGTCCGGTGCGACCCTTGATGACCCTTTGTCGGACAGGTACAAGAAGTTGGGGTGCAGCATTTCCGCGCTGGAAA AGGATTCTGATGATTACAAGATGGTGGTCAAGTACCTGAAAACAACATATGAGCCTGTCAAAGTTGCAGACATAGAATATGGAGTCAGAGTCGAGGACAT ATTCGCTGTGCAGTCGAGCGCAAGCCCGTCGTTAGAGGATATGAAGAACTTGCCGAATAAAGTCCTGCTGTGGTGTGGATCACGGACGTCAAATATGTTA AGGCATTTGCAGAAAGGGTTCTTGCCAGCGGCATGTTCCCTTCCTGTTCCTGGCTACATGTTTGGAAGAGGGATAGTTTGTTCTGATGCGGCAGCAGAAG CAGCGAGGTATGGTTTTACGGCAGTGGATAGGCCAGAAGGGTTCTTGGTTCTGGCAGTGGCCTCTCTCGGCGATCAGATCATGGAGTTCAAGACTCCACC TGAGGACACTGAAAGTCTGGAAGAGAAGAAAGTAGGAGTGAAGGGACTGGGAAGGAAGAAGACGGATGAAGCAGAGCATTTCACATGGAAAGACGGGATA AAGGTGCCATGTGGGAAGCTGGTGGCATCGGAGCACAAAGATAGCGTCCTGGAATACAATGAATATGCAGTCTATGATCCCAAGATGACGAGCATAAGGT TCTTGGTGGCAGTGAAATACGAGGAGCAGGATGCAGAGGTAGACGAGGCAGAGCCATGA
AA sequence Show only first row Show all	>Lus10019539 pacid=23181569 polypeptide=Lus10019539 locus=Lus10019539.g ID=Lus10019539.BGIv1.0 annot-version=v1.0 MLKKYQDSSRRPSRDSANPLKPLSGMVIALSGRLSRTHQEWRKLIEQNGGKVSNSVMGVSCLVATSAERDRGGSSKHAEAVERGIPVVREEWLVDCIEKQ EPQPLEAYDIMSDIAVDGKGIPWEKQDPSDQALEALTAELKLYGKRGVHKDTKLLDQGAAILEKDGILYNCAFFLCDLGRGINEFCIMQLITIEDGNLHM YYKKGKVGDDPNAEERLEEWESVDSAIKEFVNLFEEITGNEFEPWEREKKFEKKRLSFFPIDMDDGVDVRHGGLELRQLGAASLHSSLEPKVANFMKSLC SQEIYRYALMEMDMDSPDLPIGMLSDVHLKRGEEALLQFVQAVKSAEGAKGSGRNEEAVWSDHSQRWFTLMPSTRPFVFKDYKSLADNAAAGYETIRDIN VASRIIGDMSGATLDDPLSDRYKKLGCSISALEKDSDDYKMVVKYLKTTYEPVKVADIEYGVRVEDIFAVQSSASPSLEDMKNLPNKVLLWCGSRTSNML RHLQKGFLPAACSLPVPGYMFGRGIVCSDAAAEAARYGFTAVDRPEGFLVLAVASLGDQIMEFKTPPEDTESLEEKKVGVKGLGRKKTDEAEHFTWKDGI KVPCGKLVASEHKDSVLEYNEYAVYDPKMTSIRFLVAVKYEEQDAEVDEAEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Lus10019539 [exp]	0	1
AT1G04560			AWPM-19-like family protein (....		Lus10017578 [exp]	2.4	0.6566
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10042339 [exp]	14.1	0.6436
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10039546 [exp]	15.4	0.5620
AT5G25530			DNAJ heat shock family protein...		Lus10041254 [exp]	26.2	0.5449
					Lus10020692 [exp]	27.3	0.5657
					Lus10039384 [exp]	33.7	0.5379
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015094 [exp]	34.2	0.5632
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035234 [exp]	38.4	0.5186
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Lus10010098 [exp]	45.3	0.5601
AT5G16100			unknown protein		Lus10020810 [exp]	50.6	0.5124

Compare expression of checked genes

Lus10019539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.