Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56160 253 / 7e-80 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043384 [exp] 215 / 1e-65 AT3G56160 148 / 1e-40 Sodium Bile acid symporter family (.1) Lus10043443 [exp] 201 / 6e-59 AT3G56160 313 / 5e-102 Sodium Bile acid symporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G021600 [exp] 288 / 2e-93 AT3G56160 432 / 6e-150 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF01758 [flax] [poplar] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Lus10019540 pacid=23181532 polypeptide=Lus10019540 locus=Lus10019540.g ID=Lus10019540.BGIv1.0 annot-version=v1.0 ATGGCGGCATCCGCCACCATCTGCGCTATGATCTTACTACCGTCGTCGTCGCCGCCGCCGTCGGAGAGGTCAACGTCAAACTACGCACTTTCCCCTTCAT CGCGGAAGTTACTGTTGTCTGGCCTTCTTCTCGTTTCCTCCCCCAAATCGAGACGGATAACTACTGTTGCCGCAGAAAGATCGGATAAGGTAAGGTTCCT CTATCTTCTGCTTCAATTCATGATACGGGTTTTCAGGAAATTTGTTTTACCTGAGAGTACACTGCCCCTGCAGGGAAGTTGTAATGGAAGCCTGACTCAG CACACTTCGTTTTCTCAACGGTTTTCGCGTTTCACAGGATCAGTGCTAAACTTTGCCAACTCCAACTTTCTTCCTCTTGCTTTAATCAGTGCAGTAACAA TTGGAATGGTGAACCCAGCTCTCGGTTGCCAGGCTCACAAATATTCTTTGTCAAAATTTGCTACCTTTGGCATTTTCTTCATTGCAGGGCTGAAGTTGAA AGGCGAAGAAGTTGAAGCAGTTGCTGAAACATGGCCTCTAGGATTGTTTGGCCTAGGTGTCGGAACAGGACTGGCATTATTTTGTTGTGTGCCAACCACA TTATCTAGCGGAGTGGCATTGACACAGCTTGTTGGTGGAAATTCTGCTCTTGCTCTGACGATGACTGTGATATCAAACCTCTTGGGCATTCTTACTGTGC CATTTTGGGTCTCAAAGCTTTTAGCTGATGGGTTTGGTGTATCGATACCAGTGAGGCAGCTACTGTGGAATCTTACTTTAATGCTGCTGGTTCCTTTACT CTTGGGAAAGGTGGTCCGAAATAGCTTCCAAGGCCTGGGAACTTACGTAGATCGAAACCGAAGGATGTTCACTATAACAAGTATTATTCTCCTTAGCCTA ACCCCATGGATGCAAGTAAGCAAGGCAAGGCCATTGCTCGTAGCGGTTAAGCTGCAAGTATTTATTAAAGCAATTGCGATGGGCATACTTGTGCATCTGG CTATGCTGGGTGTGAATATCATAGCAATAAGAGCATTATCAGCTGGATCAGGTGGCAAAAACTCAGGTTTCTCCAAAAAAGAGAACGCACGTGCTCTTTT GATGGTCTGCAGTCAGAAAGCTCTGCTTATTGTGGTAACAGTAGTGGAGCAGCTGGGTGGTGCCCTGGGTCAATCAGGGTTGCTAGTTATTCCCTGTATT GCAGCACATATCAATCAGGTTGTCATTGACTCAATTCTGGTGAGTTTCTGGATTCGAGAGGACCAGTCTCTTAATGAAGTCGAGGATAAGGAAGCCTGA
AA sequence Show only first row Show all	>Lus10019540 pacid=23181532 polypeptide=Lus10019540 locus=Lus10019540.g ID=Lus10019540.BGIv1.0 annot-version=v1.0 MAASATICAMILLPSSSPPPSERSTSNYALSPSSRKLLLSGLLLVSSPKSRRITTVAAERSDKVRFLYLLLQFMIRVFRKFVLPESTLPLQGSCNGSLTQ HTSFSQRFSRFTGSVLNFANSNFLPLALISAVTIGMVNPALGCQAHKYSLSKFATFGIFFIAGLKLKGEEVEAVAETWPLGLFGLGVGTGLALFCCVPTT LSSGVALTQLVGGNSALALTMTVISNLLGILTVPFWVSKLLADGFGVSIPVRQLLWNLTLMLLVPLLLGKVVRNSFQGLGTYVDRNRRMFTITSIILLSL TPWMQVSKARPLLVAVKLQVFIKAIAMGILVHLAMLGVNIIAIRALSAGSGGKNSGFSKKENARALLMVCSQKALLIVVTVVEQLGGALGQSGLLVIPCI AAHINQVVIDSILVSFWIREDQSLNEVEDKEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56160			Sodium Bile acid symporter fam...		Lus10019540 [exp]	0	1
AT3G56160			Sodium Bile acid symporter fam...		Lus10043384 [exp]	2.8	0.8601
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	3.5	0.8783
AT1G31170		ATSRX	sulfiredoxin (.1.2.3.4)		Lus10038354 [exp]	3.7	0.8796
AT2G23390			unknown protein		Lus10010689 [exp]	4.9	0.8619
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10019123 [exp]	5.3	0.8752
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	6.8	0.8863
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	9.2	0.8511
AT3G07670			Rubisco methyltransferase fami...		Lus10016087 [exp]	11.0	0.8538
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036099 [exp]	11.5	0.8614
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	19.4	0.8496

Compare expression of checked genes

Lus10019540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.