Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27550 167 / 2e-53 ATC centroradialis (.1) AT5G03840 150 / 1e-46 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 125 / 5e-37 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 97 / 8e-26 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 92 / 7e-24 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 89 / 9e-23 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043385 [exp] 247 / 4e-85 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10020600 [exp] 185 / 2e-60 AT2G27550 263 / 3e-91 centroradialis (.1) Lus10004886 [exp] 181 / 6e-59 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10021372 [exp] 162 / 2e-51 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004884 [exp] 154 / 2e-48 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10027442 [exp] 151 / 3e-47 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 147 / 1e-45 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10019518 [exp] 103 / 3e-29 AT2G27550 140 / 2e-43 centroradialis (.1) Lus10013532 [exp] 100 / 6e-27 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203900 [exp] 182 / 2e-59 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.009G165100 [exp] 182 / 2e-59 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.015G141300 [exp] 103 / 4e-29 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.008G077700 [exp] 101 / 8e-28 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 98 / 2e-26 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 94 / 1e-24 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10019541 pacid=23181578 polypeptide=Lus10019541 locus=Lus10019541.g ID=Lus10019541.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCAGATCCTCTAGTGATAGGTAGAGTGATTGGAGATGTTGTTGATGGATTGAATCCAAGTCCTGTGAAGATGGCAGTCACTTACAGCTCTG CTAATAAACAAGTGTTCAATGGCCATGAGTTCTTCCCTTCTGCTGTTACTCAGAAGCCTAAGGTTGAAGTTCTTGGTGGTGATCTCAGGGTAGTGAGTGA TATTCCTGGCACCACTGACGCAACGTTTGGGAGGGAAGTGATAAGCTATGAGATGGCGAGGCCGAACATAGGGATTCACAGGTACGTATTCCTGCTGTTC AAGCAGAGAGCAAGAGGGCAAGTGAGCAATATTCTGGGCTCAAATTATTCGTCATCAAGGGACTACTTCTGCACTCGAAAGTTTGCGCAGGACAATCAAC TTTCTCTCCCTGTTGCAGCTGTGTACTTCAATGCTCAGCGTGAGACTGCCGCCAGACGCCGTTAA
AA sequence Show only first row Show all	>Lus10019541 pacid=23181578 polypeptide=Lus10019541 locus=Lus10019541.g ID=Lus10019541.BGIv1.0 annot-version=v1.0 MSSSDPLVIGRVIGDVVDGLNPSPVKMAVTYSSANKQVFNGHEFFPSAVTQKPKVEVLGGDLRVVSDIPGTTDATFGREVISYEMARPNIGIHRYVFLLF KQRARGQVSNILGSNYSSSRDYFCTRKFAQDNQLSLPVAAVYFNAQRETAARRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27550		ATC	centroradialis (.1)		Lus10019541 [exp]	0	1
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	1.4	0.9077
AT3G19200			unknown protein		Lus10014046 [exp]	5.2	0.8779
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	6.6	0.8677
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Lus10014453 [exp]	9.9	0.8276
AT2G24130			Leucine-rich receptor-like pro...		Lus10010772 [exp]	14.8	0.8549
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10030414 [exp]	16.4	0.8863
AT5G65660			hydroxyproline-rich glycoprote...		Lus10028221 [exp]	20.2	0.8529
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024648 [exp]	20.3	0.8464
AT4G09890			Protein of unknown function (D...		Lus10033529 [exp]	29.4	0.8333
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Lus10007526 [exp]	30.9	0.8479

Compare expression of checked genes

Lus10019541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.