Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44460 79 / 8e-17 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56850 61 / 1e-10 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 61 / 1e-10 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 59 / 9e-10 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT4G34000 52 / 1e-07 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT2G36270 51 / 4e-07 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G19290 46 / 2e-05 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT1G45249 45 / 3e-05 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043386 [exp] 261 / 4e-87 AT4G34000 100 / 2e-24 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Lus10022720 [exp] 71 / 9e-14 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10017049 [exp] 70 / 2e-13 AT2G36270 321 / 1e-106 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10021369 [exp] 66 / 4e-12 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 65 / 1e-11 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008928 [exp] 53 / 2e-08 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10014066 [exp] 52 / 2e-07 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10028889 [exp] 51 / 3e-07 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 50 / 4e-07 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083000 [exp] 85 / 1e-18 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.009G018500 [exp] 80 / 2e-17 AT3G56850 160 / 1e-47 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 79 / 1e-16 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.001G220700 [exp] 75 / 1e-15 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.010G248100 [exp] 64 / 1e-11 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 62 / 5e-11 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.008G010800 [exp] 60 / 2e-10 AT3G56850 246 / 3e-80 ABA-responsive element binding protein 3 (.1) Potri.006G025800 [exp] 52 / 7e-08 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 52 / 1e-07 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.014G028200 [exp] 51 / 3e-07 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10019542 pacid=23181473 polypeptide=Lus10019542 locus=Lus10019542.g ID=Lus10019542.BGIv1.0 annot-version=v1.0 ATGAATGGTGTTCCTAGAGACAAGTCTTTCTGGACTCTGACGCTGAATGAAATTGAACGCAAGAACGGGAGGAACTTAGGGTCTATGAGCATGGATGATT TCTTGACTCACTTGTTGAATCTCGAAAATCTTGATGATGAATACACTGCTGCTCATCGTCCGGTTCAACTACCTCAACCACCAAATTACAACATTAATAA TAATGGTTCTAATCAGCTGCCCAGAAGGCCCTTCATGGGTGCTCCTCCATTACTGCAACAGCCTTATTTTCCTATACCTTCCCCTATGTATAAGAAGACA GTGGGCGACGTGTGGTTCGAGATCCAGAGGGAGCAGAATCCTGCGAACAATGTCGCCGTTGTTCCTCCTCCCGAGAGGCAGCAGTCTTTTGGGGAGATGA CATTGGAGGATTTCCTGGTGCTAGCTGGTGTGGTTCGGAAGAAAGTGGTGCAGCCAACATTGGATCAGGTGCTAGTCGAAACAGTACCGTCGAGGCCATC AGAAGAAGTAATGATCCCTGCAGAGAATGATGTGCCGAGGGCTAGATATTTCGCGGGGGAGAGAAGGCATCGCAGGATGATTAAGAACAGAGAATCTGCT GCCAGATCCAGGGCTAGAAGACAGGCATACACCTTGGAGTTGGAACTTGAGTTGGATTCTCTCAAGGAAGAGAATATTAGACTCAGGCAAACATTGGAGG CTGAGGAGAATAACAAAGAAAAGGTTGTGAAGATGAAGAAAGAAGGACCTAAGCCTAAGAAGGCAGACAAGGTGGAGGGCATAAGGAGGACAACAAGCAT GAGTTGGTGA
AA sequence Show only first row Show all	>Lus10019542 pacid=23181473 polypeptide=Lus10019542 locus=Lus10019542.g ID=Lus10019542.BGIv1.0 annot-version=v1.0 MNGVPRDKSFWTLTLNEIERKNGRNLGSMSMDDFLTHLLNLENLDDEYTAAHRPVQLPQPPNYNINNNGSNQLPRRPFMGAPPLLQQPYFPIPSPMYKKT VGDVWFEIQREQNPANNVAVVPPPERQQSFGEMTLEDFLVLAGVVRKKVVQPTLDQVLVETVPSRPSEEVMIPAENDVPRARYFAGERRHRRMIKNRESA ARSRARRQAYTLELELELDSLKEENIRLRQTLEAEENNKEKVVKMKKEGPKPKKADKVEGIRRTTSMSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44460	bZIP	DPBF2, ATBZIP67	basic leucine zipper transcrip...		Lus10019542 [exp]	0	1
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	5.1	1.0000
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	5.6	1.0000
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10040432 [exp]	9.2	1.0000
					Lus10003831 [exp]	10.6	1.0000
AT5G64790			O-Glycosyl hydrolases family 1...		Lus10005788 [exp]	11.8	1.0000
					Lus10008789 [exp]	12.7	1.0000
					Lus10006010 [exp]	13.0	1.0000
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	13.0	1.0000
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10036470 [exp]	13.1	1.0000
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10010970 [exp]	14.1	1.0000

Compare expression of checked genes

Lus10019542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.