Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08320 504 / 1e-176 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT5G06839 343 / 3e-114 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT3G12250 337 / 1e-113 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06950 337 / 3e-113 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT5G06960 327 / 2e-109 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT5G10030 311 / 1e-102 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G68640 310 / 4e-101 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1) AT5G65210 302 / 4e-100 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT1G22070 300 / 3e-98 bZIP TGA3 TGA1A-related gene 3 (.1) AT1G77920 292 / 4e-95 bZIP bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043387 [exp] 734 / 0 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10004876 [exp] 552 / 0 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10020610 [exp] 543 / 0 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Lus10026166 [exp] 352 / 6e-119 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 348 / 2e-117 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 348 / 2e-117 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10023822 [exp] 347 / 8e-115 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Lus10041475 [exp] 304 / 4e-98 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1) Lus10009055 [exp] 299 / 1e-97 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203400 [exp] 525 / 0 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 519 / 0 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) Potri.016G036500 [exp] 357 / 3e-119 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.016G049200 [exp] 358 / 4e-119 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.006G039000 [exp] 356 / 1e-118 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.006G058800 [exp] 357 / 2e-118 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.001G029800 [exp] 346 / 6e-115 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.003G194600 [exp] 346 / 1e-114 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.008G118300 [exp] 338 / 6e-112 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 310 / 4e-102 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10019543 pacid=23181564 polypeptide=Lus10019543 locus=Lus10019543.g ID=Lus10019543.BGIv1.0 annot-version=v1.0 ATGGTGAGCAACGGAATGGGAAAGACTCATCACGATCCTTATGCTTTGTTCAATGGAATCAACCCTCCTTCCACCACTTTCATTCACTCAGACGGCCCTG ATTTTGATTTTGGGGAGCTGGAGGAGGCAATTTTACTGCAAGGAGGAGTCAAGATTAGGAACGATGAAAGACCATTGAGAGAAGGTGCAGATGCAGTAGC AGCAGCTGCAGGGAAGACCCTTGAAATAATGTTCCCCTCATGGCCAATGAGATTCCAACATGCTTATACTCCCACCATACTACCTGAGCAGCAGGGGAGC TCTAGGTCAGGAGAGGAAAGTACGGATGATGATTCAGGGTCAGCAGTAAACACCATAACAGTAAAAACTGATCAATATCATCATCATCAGAATCAAGGTA AAAGATCAGCACCACCAGCCTCTTCTTTCTCGGATCATTTTCAGCAGCATCACCAAATGGAGATTTCAGCAGCTGGAAATGACCAGGGGAAAGTGACACC ACCGGAGAAGTCGCTGGATGCTAAGGCACTGAGGCGTTTGGCTCAGAACAGAGAAGCTGCAAGGAAGAGCCGCCTTAGGAAAAAGGCCTATGTCCAGCAG CTGGAATCCAGCAGAATCAAGCTTTCCCAGTTGGAACAGGAGCTTCACAGAGCACGCCAGCAGGGTGTGTTCATAGGTGGCAATCTTAGCTCTGCGGCGG CGATGTTTGATGCAGAATATGGAAGGTGGGTGGAGGAGGACCTCCGGCAAATGTCTGAGCTCCAATCGGCGCTGCATTCTCAGTTATCGGAGAGCGAGCT AAGGGAGGTTGTAGAGCGCTACGTTTGTCATTATGACGAGATATTCAGGCTGAAAGGAGCGACTGCGAAATCGGACGTATTCCATCTAATCACCGGAATG TGGTGCACCTCGGCGGAGAGATGCTTCCATTGGATGGGTGGGTTTAGGCCCTCTGACCTTATCAAGATGTTGATATCACAGTTAGATCCATTGACGGAGC AGCAAGTGATGGGGATATACAGTCTTCAACATTCGACGCAGCAGGCTGAAGAGGCACTGACTCAAGGGCTTGAGCAGCTCCAGCATTCTCTCGTCGGCAC AATCGCAGCTCCGGCCGACTGGATGCAGCAGATGGCCATCGCTTTGGCCAAGGTTTCCAATCTCCAAAGCTTTCTACGCCAGGCTGATAATTTGAGACAA CAGACGATTCACCAACTGCGGCGGATCTTGACGGTGCGGCAGGCGGCGCGGTGTTTCTTGGTGATCGGAGAGTATTATGGACGACTAAGGGCACTGAGCT CGTTATGGGCATCTCGTCCCCGAGAGGTGGTGATCAGCGAAGAGAAGTCGTGCCAAATGATCACAAGTGATGTACAAATGGTGCAGCTTCCTCCTCCGCA GCACAGTCATTTCGCTAGCTTTTGA
AA sequence Show only first row Show all	>Lus10019543 pacid=23181564 polypeptide=Lus10019543 locus=Lus10019543.g ID=Lus10019543.BGIv1.0 annot-version=v1.0 MVSNGMGKTHHDPYALFNGINPPSTTFIHSDGPDFDFGELEEAILLQGGVKIRNDERPLREGADAVAAAAGKTLEIMFPSWPMRFQHAYTPTILPEQQGS SRSGEESTDDDSGSAVNTITVKTDQYHHHQNQGKRSAPPASSFSDHFQQHHQMEISAAGNDQGKVTPPEKSLDAKALRRLAQNREAARKSRLRKKAYVQQ LESSRIKLSQLEQELHRARQQGVFIGGNLSSAAAMFDAEYGRWVEEDLRQMSELQSALHSQLSESELREVVERYVCHYDEIFRLKGATAKSDVFHLITGM WCTSAERCFHWMGGFRPSDLIKMLISQLDPLTEQQVMGIYSLQHSTQQAEEALTQGLEQLQHSLVGTIAAPADWMQQMAIALAKVSNLQSFLRQADNLRQ QTIHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWASRPREVVISEEKSCQMITSDVQMVQLPPPQHSHFASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	0	1
					Lus10021794 [exp]	1.0	0.8399
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	1.7	0.8075
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	2.4	0.8278
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	5.3	0.8054
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	10.2	0.8004
AT5G38900			Thioredoxin superfamily protei...		Lus10005083 [exp]	14.2	0.7809
AT1G55760			BTB/POZ domain-containing prot...		Lus10027101 [exp]	14.5	0.7840
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	16.7	0.7617
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Lus10035003 [exp]	17.7	0.7277
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	18.2	0.7535

Compare expression of checked genes

Lus10019543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.