Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25520 441 / 1e-157 PGY3, ATL5, OLI5, RPL5A RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) AT5G39740 439 / 1e-156 OLI7, RPL5B OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043388 [exp] 566 / 0 AT3G25520 471 / 2e-169 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) Lus10020612 [exp] 521 / 0 AT3G25520 467 / 1e-167 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2) Lus10004874 [exp] 521 / 0 AT3G25520 464 / 1e-166 RIBOSOMAL PROTEIN L5 A, PIGGYBACK3, OLIGOCELLULA 5, ribosomal protein L5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G099000 [exp] 489 / 2e-176 AT5G39740 461 / 2e-165 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2) Potri.014G197100 [exp] 486 / 4e-175 AT5G39740 471 / 2e-169 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2) Potri.013G128600 [exp] 476 / 2e-171 AT5G39740 422 / 6e-150 OLIGOCELLULA 7, ribosomal protein L5 B (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0267 [flax] [poplar] S11_L18p PF00861 [flax] [poplar] Ribosomal_L18p Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Representative CDS sequence Show only first row Show all	>Lus10019544 pacid=23181469 polypeptide=Lus10019544 locus=Lus10019544.g ID=Lus10019544.BGIv1.0 annot-version=v1.0 ATGGCGTTCGCAAAAGCCCAGAAAACCAGAGCCTATTTCAAGCGTTTCCAGGTCAAGTACAGGAGACGCCGGGCTGGGAAGACCGATTACCGTGCTAGGA TTCGTCTGATTAATCAGGACAAGAACAAGTACAACACACCCAAGTACCGCTTTGTTGTTCGCTTTACGAACAAAGATGTCGTGGCCCAGATTATCCATTC TACCATTGTTGGTGATCATATTCTTGCGGCAGCTTACTCCCATGAGCTTCCCCGCTATGGCCTTGAAGTTGGACTTACAAATTATTCGGCTGCATACTGC ACTGGACTTCTCCTTGCTCGCAGAGTCCTGAAAAAGCTTGAGATGGATCAGGAGTATACTGGCAATGTCGAGGCTACTGGAGAGGACTTTTCAGTTGAAC CTTCGGAAAACAGACGCCCTTTCCGTGCTCTTCTTGATGTTGGTCTTGTTAGGACTACAACTGGAAACCGTGTTTTTGGTGCCCTCAAGGGAGCTTTGGA TGGTGGACTTGACATCCCTCACAGTGATAAGAGGTTTGCTGGGTTCAGCAAGGACGGCAAGCAACTGGATGCTGAAGTTCACCGCAAATACTTGTATGGT GGCCACGTTGCTTCCTACATGAGGAGTCTCCAAGAAGATGAGCCAGAGAAGTACCAGACTCACTTCAGCGAGTACCTAAAGAGAGGCCTTGGTCCCGATG AGATTGAGGCATTGTACAAGAAGGTTCATGCTGCAATCCGTGCTGACCCGGCCGTCAAGAAGTCTGACAAGCCCGTAGTGACAGAGCACAAGAGGCACAA CCCAAAGAGGCTTACCTATGATGAACGAAGGTCTAAGTTGATCGAAAGGCTGAATGCTCTGAACTCTGCTGCAGATGAGGAAGAGGACGATGATTAG
AA sequence Show only first row Show all	>Lus10019544 pacid=23181469 polypeptide=Lus10019544 locus=Lus10019544.g ID=Lus10019544.BGIv1.0 annot-version=v1.0 MAFAKAQKTRAYFKRFQVKYRRRRAGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDVVAQIIHSTIVGDHILAAAYSHELPRYGLEVGLTNYSAAYC TGLLLARRVLKKLEMDQEYTGNVEATGEDFSVEPSENRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFSKDGKQLDAEVHRKYLYG GHVASYMRSLQEDEPEKYQTHFSEYLKRGLGPDEIEALYKKVHAAIRADPAVKKSDKPVVTEHKRHNPKRLTYDERRSKLIERLNALNSAADEEEDDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	0	1
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10043388 [exp]	1.4	0.9397
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10008640 [exp]	1.7	0.9131
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10020612 [exp]	2.8	0.9270
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025679 [exp]	6.0	0.8454
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10039360 [exp]	6.6	0.9022
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10013381 [exp]	7.1	0.8861
AT1G09690			Translation protein SH3-like f...		Lus10030882 [exp]	7.3	0.8813
AT3G45030			Ribosomal protein S10p/S20e fa...		Lus10031706 [exp]	8.4	0.8720
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	8.5	0.8728
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	10.2	0.8751

Compare expression of checked genes

Lus10019544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.