Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27480 224 / 2e-74 Calcium-binding EF-hand family protein (.1) AT5G04170 214 / 1e-68 Calcium-binding EF-hand family protein (.1) AT3G10300 209 / 5e-67 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT4G37010 41 / 0.0002 CEN2 centrin 2 (.1.2) AT3G03400 40 / 0.0003 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043389 [exp] 412 / 2e-148 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10035435 [exp] 208 / 7e-67 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10042037 [exp] 207 / 5e-66 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10018041 [exp] 206 / 7e-65 AT3G10300 338 / 9e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 188 / 7e-61 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10009127 [exp] 44 / 4e-05 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10030134 [exp] 42 / 0.0002 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10009947 [exp] 42 / 0.0003 AT5G19450 889 / 0.0 calcium-dependent protein kinase 19 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202200 [exp] 303 / 5e-105 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.009G163600 [exp] 292 / 1e-100 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.006G047300 [exp] 207 / 6e-67 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.016G043600 [exp] 206 / 6e-66 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.001G231100 [exp] 39 / 0.0006 AT2G44310 221 / 2e-75 Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10019545 pacid=23181601 polypeptide=Lus10019545 locus=Lus10019545.g ID=Lus10019545.BGIv1.0 annot-version=v1.0 ATGTCTAGTAATTCTTATGGTAGATCACACTCCTACGCGCCTTCAGCTCCTTCCCTTCCGGGACAAGTTGATCACCGACGGCAGCAGCAGCAGTATTACC AGCAGGGCAGGAGTACTGCATCGGATTTCCCACCGGGGACACACCCGGATGTGATCCGGAGCTTCCAGATGGTGGATGTTGACCGGAGTGGTTATATTGA TGAGAAGGAGCTTCAGCAAGCTCTTTCCTCTGTCTATCAGAGGTTCCACATCAGAACCATTAGATTGCTCATGTTTCTCTTCAAGAGTCACCACGATTCT CTTCGAATTGGGCCTAAAGAATTTGCAGCTTTGTGGAGTTGTCTCGGTCAATGGCGTGCCATATTCGATAGATATGACAGAGACAGAAGTGGAAAGATCG ATTTGTTCGAATTTCGGGACGCCCTTTACGGGCTTGGATATGCAGTCCCACCTTCTGTTCTGAAGATACTGATGTCTAAGTATGATGATGGAACTGGCAG AAAGATTGAACTTAGCTTTGATAGTTTCGTTGAGTGCGGACTTATTTTGAAGGGATTAACAGACAAGTTTAAAGAGAAGGACAAGCGTTATGCAGGTCAA GCAACGTTCAACTATGATGAGTTCATGTGCACAGTCCTACCCTTTCTGGTGTTGTATGATTGA
AA sequence Show only first row Show all	>Lus10019545 pacid=23181601 polypeptide=Lus10019545 locus=Lus10019545.g ID=Lus10019545.BGIv1.0 annot-version=v1.0 MSSNSYGRSHSYAPSAPSLPGQVDHRRQQQQYYQQGRSTASDFPPGTHPDVIRSFQMVDVDRSGYIDEKELQQALSSVYQRFHIRTIRLLMFLFKSHHDS LRIGPKEFAALWSCLGQWRAIFDRYDRDRSGKIDLFEFRDALYGLGYAVPPSVLKILMSKYDDGTGRKIELSFDSFVECGLILKGLTDKFKEKDKRYAGQ ATFNYDEFMCTVLPFLVLYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27480			Calcium-binding EF-hand family...		Lus10019545 [exp]	0	1
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	4.1	0.9323
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10036413 [exp]	7.5	0.9229
AT4G21920			unknown protein		Lus10002068 [exp]	7.5	0.9081
AT4G35110			Arabidopsis phospholipase-like...		Lus10042396 [exp]	11.2	0.9180
AT2G32190			unknown protein		Lus10039015 [exp]	13.6	0.9156
AT2G20900		DGK5, ATDGK5	diacylglycerol kinase 5 (.1.2....		Lus10033732 [exp]	14.5	0.8877
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	15.3	0.9080
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	18.0	0.9135
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	20.6	0.9093
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	23.4	0.9081

Compare expression of checked genes

Lus10019545 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.