Plant FIBer expression Database

Lus10019547 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G21050 100 / 2e-26 unknown protein
AT5G64090 61 / 5e-12 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001150
[exp]
191 / 2e-61 AT5G21050 348 / 2e-119 unknown protein
Lus10015829
[exp]
61 / 3e-12 AT5G64090 146 / 6e-42 unknown protein
Lus10020420
[exp]
61 / 7e-12 AT5G64090 453 / 6e-154 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G158000
[exp]
108 / 3e-29 AT5G21050 380 / 2e-131 unknown protein
Potri.004G195900
[exp]
103 / 9e-28 AT5G21050 326 / 1e-110 unknown protein
Potri.001G209800
[exp]
59 / 3e-11 AT5G64090 333 / 4e-111 unknown protein
Potri.003G020500
[exp]
58 / 5e-11 AT5G64090 350 / 1e-117 unknown protein
PFAM info
Representative CDS sequence
>Lus10019547 pacid=23169902 polypeptide=Lus10019547 locus=Lus10019547.g ID=Lus10019547.BGIv1.0 annot-version=v1.0
ATGGACTCCAAGCTGGAGTTCTGGGACAACTGGGCGTGGCTACATAATAAGAAGAAGCGAGGAAACGAGGACCGGGGAGAGAAGAAGATACCTCTACTGT
GGGAACTGATGCAGCCTATATTGAGGATATTAGGCCATTGTATAATGGGACCGGCCAAAGATTCGCAGCTTTACGAAGCTGCTTGCGGTGCATGTAGGAG
TTTGCAATCCAGGTATCTTAATCAGATGGATGCTAAGTCCATTTTGGCTAACGGAAGTTTGCTTGTGGTTGCAGAGATGGCTACCGATCCTAAGAATAAC
GTTGATTATAATGAGATAAAGTTTACGGATACCATTACTGTTTGA
AA sequence
>Lus10019547 pacid=23169902 polypeptide=Lus10019547 locus=Lus10019547.g ID=Lus10019547.BGIv1.0 annot-version=v1.0
MDSKLEFWDNWAWLHNKKKRGNEDRGEKKIPLLWELMQPILRILGHCIMGPAKDSQLYEAACGACRSLQSRYLNQMDAKSILANGSLLVVAEMATDPKNN
VDYNEIKFTDTITV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G21050 unknown protein Lus10019547
[exp]
0 1
AT5G62280 Protein of unknown function (D... Lus10031122
[exp]
1.7 0.8447
AT3G52440 DOF AtDof3,5 Dof-type zinc finger DNA-bindi... Lus10013586
[exp]
4.5 0.8057
AT1G04040 HAD superfamily, subfamily III... Lus10023731
[exp]
4.9 0.8275
AT5G52900 MAKR6 MEMBRANE-ASSOCIATED KINASE REG... Lus10039313
[exp]
6.5 0.7366
AT2G17080 Arabidopsis protein of unknown... Lus10023962
[exp]
6.7 0.7998
AT2G13690 PRLI-interacting factor, putat... Lus10033484
[exp]
8.4 0.6665
AT5G40830 ATRAD3, ATATR S-adenosyl-L-methionine-depend... Lus10007588
[exp]
9.5 0.7699
AT3G07880 SCN1 SUPERCENTIPEDE1, Immunoglobuli... Lus10002272
[exp]
12.2 0.8125
AT4G35690 Arabidopsis protein of unknown... Lus10041834
[exp]
14.7 0.7160
AT5G52280 Myosin heavy chain-related pro... Lus10029303
[exp]
14.8 0.7620

Lus10019547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.