Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51105 48 / 6e-08 Protein of unknown function (DUF1278) (.1) AT4G09545 47 / 2e-07 ECA1 gametogenesis related family protein (.1) AT5G52965 47 / 3e-07 Protein of unknown function (DUF1278) (.1) AT3G42565 46 / 3e-07 ECA1 gametogenesis related family protein (.1) AT2G21750 46 / 5e-07 Protein of unknown function (DUF1278) (.1) AT5G52975 46 / 5e-07 Protein of unknown function (DUF1278) (.1) AT5G36657 44 / 3e-06 ECA1 gametogenesis related family protein (.1) AT2G14378 43 / 7e-06 Protein of unknown function (DUF1278) (.1) AT5G36658 42 / 2e-05 ECA1 gametogenesis related family protein (.1) AT5G42895 42 / 2e-05 ECA1 gametogenesis related family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032886 [exp] 114 / 3e-33 AT5G52975 52 / 1e-09 Protein of unknown function (DUF1278) (.1) Lus10001307 [exp] 112 / 2e-32 AT5G52975 44 / 2e-06 Protein of unknown function (DUF1278) (.1) Lus10027141 [exp] 111 / 4e-32 AT5G52975 46 / 5e-07 Protein of unknown function (DUF1278) (.1) Lus10019552 [exp] 106 / 2e-30 AT5G51105 37 / 7e-04 Protein of unknown function (DUF1278) (.1) Lus10019428 [exp] 71 / 1e-16 AT2G14378 50 / 1e-08 Protein of unknown function (DUF1278) (.1) Lus10043285 [exp] 71 / 1e-16 AT5G51105 47 / 1e-07 Protein of unknown function (DUF1278) (.1) Lus10028291 [exp] 70 / 2e-15 AT2G14378 44 / 8e-06 Protein of unknown function (DUF1278) (.1) Lus10034455 [exp] 66 / 3e-14 AT2G14378 49 / 5e-08 Protein of unknown function (DUF1278) (.1) Lus10019101 [exp] 66 / 6e-14 AT2G14378 50 / 3e-08 Protein of unknown function (DUF1278) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191800 [exp] 42 / 2e-05 AT1G76750 115 / 7e-34 Protein of unknown function (DUF1278) (.1) Potri.009G077000 [exp] 41 / 5e-05 AT1G76750 127 / 6e-38 Protein of unknown function (DUF1278) (.1) Potri.001G353600 [exp] 39 / 0.0002 AT1G76750 120 / 1e-35 Protein of unknown function (DUF1278) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10019549 pacid=23169913 polypeptide=Lus10019549 locus=Lus10019549.g ID=Lus10019549.BGIv1.0 annot-version=v1.0 ATGGCTATACTACTGAGGGGGATTACAGCTGCTTTCATTCTTATTGTAGCACTACTCGCCCTATCCGGATATGCAGAAAATGATGTCGATATTGACCTAA GGATGCAAAACACAACAAGAACATTGTCGCCGATATGTAGACCAGGGATGTTGCGTCCAGAAATGGCAGCAAAATGCTGGTCTGCTATTCTTGAGCTGCC AGCCTGCGTGTTTGAGGTGGTAGAGGTATTCCAAGGAGGATCTACCTTCAAACTTGGACGGGCTTGCTGTAACGCATTCATCGACCTTACTGAAGACTGT AAGCTTGAGGTGTTCGAGCATTCCAAACTGTTCGCTCATACCCTTAAATTTTGCGTCTCTATTGGTGGAGGTGGTAGCCACAATAATAGTCATTCTCCAC CGCCTCATTCCCCATAA
AA sequence Show only first row Show all	>Lus10019549 pacid=23169913 polypeptide=Lus10019549 locus=Lus10019549.g ID=Lus10019549.BGIv1.0 annot-version=v1.0 MAILLRGITAAFILIVALLALSGYAENDVDIDLRMQNTTRTLSPICRPGMLRPEMAAKCWSAILELPACVFEVVEVFQGGSTFKLGRACCNAFIDLTEDC KLEVFEHSKLFAHTLKFCVSIGGGGSHNNSHSPPPHSP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51105			Protein of unknown function (D...		Lus10019549 [exp]	0	1
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10021864 [exp]	8.2	0.8070
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033516 [exp]	15.7	0.7715
AT1G54860			Glycoprotein membrane precurso...		Lus10004470 [exp]	17.5	0.7810
					Lus10009927 [exp]	18.1	0.7934
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Lus10043352 [exp]	19.1	0.7919
					Lus10015488 [exp]	22.9	0.7814
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10028330 [exp]	24.4	0.7814
					Lus10027893 [exp]	27.3	0.7678
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10032973 [exp]	30.6	0.7644
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007501 [exp]	30.8	0.6898

Compare expression of checked genes

Lus10019549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.