Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17420 202 / 4e-65 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) AT4G35460 195 / 4e-62 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1) AT2G41680 120 / 1e-32 NTRC NADPH-dependent thioredoxin reductase C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025845 [exp] 233 / 3e-78 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10038256 [exp] 232 / 5e-78 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Lus10006853 [exp] 209 / 4e-64 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Lus10018051 [exp] 120 / 1e-32 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10042048 [exp] 120 / 2e-32 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1) Lus10037596 [exp] 99 / 2e-27 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456800 [exp] 212 / 9e-69 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.011G145100 [exp] 201 / 2e-64 AT2G17420 568 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1) Potri.006G049100 [exp] 117 / 2e-31 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10019550 pacid=23169911 polypeptide=Lus10019550 locus=Lus10019550.g ID=Lus10019550.BGIv1.0 annot-version=v1.0 ATGGTGAGCAAGGTCGATTTCTCTTCCATTCCATTCAAGGTTTTCACCCATTCGAAGACCGTCCCCGCCGATACCGTCGTGGTTTCCACCGGCGCAATGG AAAAGCGGCTTCAGTTCTTTAGGTCGAAGACTTTCTTGAACCGAGGAATATCAGCCTGTGCGGTCTGCGAGGGCGCCACCCCAATTTTCAGGAACAAGCC GCTGGTGGTGATCGGCGGAGGGGATTCTGCAATGGATGAAGCGAATTTGTTGACCAAGTATGGTAGCAAAGTGTACATCATCCACATGAGGGATACTTTC AGGGCGTCCAAGATAATGCAGAATAGGACTTTGACGAACCCTAAGATAGAGGTGGTGTGGAATTCGATGGCGGAGGAGGCTGATGCAGAGAATAATCGAG GTGGTTTGAAGACAATGGCACCCTCAAGCCTGCTAGACTAG
AA sequence Show only first row Show all	>Lus10019550 pacid=23169911 polypeptide=Lus10019550 locus=Lus10019550.g ID=Lus10019550.BGIv1.0 annot-version=v1.0 MVSKVDFSSIPFKVFTHSKTVPADTVVVSTGAMEKRLQFFRSKTFLNRGISACAVCEGATPIFRNKPLVVIGGGDSAMDEANLLTKYGSKVYIIHMRDTF RASKIMQNRTLTNPKIEVVWNSMAEEADAENNRGGLKTMAPSSLLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Lus10019550 [exp]	0	1
AT5G52790			CBS domain-containing protein ...		Lus10027527 [exp]	3.7	0.7497
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	7.9	0.7397
					Lus10004437 [exp]	9.6	0.7397
AT5G28690			Protein of unknown function (D...		Lus10005536 [exp]	11.1	0.5652
					Lus10021739 [exp]	11.1	0.7397
AT3G08030			Protein of unknown function, D...		Lus10029502 [exp]	12.4	0.7397
AT2G29880			unknown protein		Lus10005028 [exp]	13.0	0.6832
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	13.6	0.7397
					Lus10039674 [exp]	14.7	0.7397
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	15.7	0.7397

Compare expression of checked genes

Lus10019550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.