Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21140 326 / 2e-111 EMB1379 embryo defective 1379 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G195600 [exp] 381 / 9e-131 AT5G21140 325 / 2e-108 embryo defective 1379 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF08746 [flax] [poplar] zf-RING-like RING-like domain CL0123 [flax] [poplar] HTH PF07574 [flax] [poplar] SMC_Nse1 Nse1 non-SMC component of SMC5-6 complex
Representative CDS sequence Show only first row Show all	>Lus10019555 pacid=23169925 polypeptide=Lus10019555 locus=Lus10019555.g ID=Lus10019555.BGIv1.0 annot-version=v1.0 ATGGGGGTTCTCAATTGGAGGCACCACACCCTCATCCAGGCTTTGATGGCTCATGGTCCGCTCATGGAGGACGACTTCCGACAAATCTATGCTGACCTTA CTGGCAAAAACACTAGAACTAATGCAAAGAATTTCAATGATTTTACGCTCAAGATAAATAAGGAACTTTCTCTTGTCCAGATGGAGTTGCGGTGCTGTAG GAACCAAAACGACGGACGAATCTGTTATGGACTGGTCAACATTGTTGCGGATGAACAGTCCAAGCTTGGGACCAAGTACTCCGTTCCCCAGATTGCTTTG TTTAAGGGAATTATAGAGGCAATTGCCCAAGATGACACAGCTCATGGTAGCATTTCGACAATAACAGCTCTCAACGTACGACTCGAGACTCAGCTTCAAT ATGGATCAGGTATGCAGTCGCAAGGCAGTCCTGAAGTGCCGGCTGCAATAAGGAATTTCTCAATGTCCCAAAAGGAAAGAACTATTGATGAACTGGTAGA AGACAAATGGCTTTCTAAGACTCCAGATGGCGACATTGGGTTAGGGTTCAGATCCTACCTTGATCTGCGAAGTTGGTTCCATAATATGGGTATTCCTTCT TGTGAAATCTGCAATGAAGGTGCCGTTAAGGCAAAAGTGTGCCCTACTGAAGGTTGCAATGTCAGAATCCACGAGTACTGCTTGAATAAGAAACGGCCAG AAAAAAAGGGGAAATTAGTATGTTCCAGCTGTGGAACTGGCTGGCCATATGGAATACCCAAGAATGAAGTCACAGAGGAAGCGGCTGTAGAAGAAAGTCA AACCACCGAAACGCAGAAAGGGACTGGATTGAAAAGGAAGCGGAACCAGTTGACTGGTAATGTTGGTGCAGAATCCGTATCTGGTTCAACTGAAGTCTCT CAACCATCTGACAGTGTGAGAAGAAGCACCCGGTTTTCTGGTAGACAAAGGTAG
AA sequence Show only first row Show all	>Lus10019555 pacid=23169925 polypeptide=Lus10019555 locus=Lus10019555.g ID=Lus10019555.BGIv1.0 annot-version=v1.0 MGVLNWRHHTLIQALMAHGPLMEDDFRQIYADLTGKNTRTNAKNFNDFTLKINKELSLVQMELRCCRNQNDGRICYGLVNIVADEQSKLGTKYSVPQIAL FKGIIEAIAQDDTAHGSISTITALNVRLETQLQYGSGMQSQGSPEVPAAIRNFSMSQKERTIDELVEDKWLSKTPDGDIGLGFRSYLDLRSWFHNMGIPS CEICNEGAVKAKVCPTEGCNVRIHEYCLNKKRPEKKGKLVCSSCGTGWPYGIPKNEVTEEAAVEESQTTETQKGTGLKRKRNQLTGNVGAESVSGSTEVS QPSDSVRRSTRFSGRQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21140		EMB1379	embryo defective 1379 (.1)		Lus10019555 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	2.8	0.8029
AT3G55340		PHIP1	phragmoplastin interacting pro...		Lus10003287 [exp]	4.9	0.7847
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031846 [exp]	8.1	0.7657
AT5G56280		CSN6A	COP9 signalosome subunit 6A (....		Lus10027082 [exp]	15.2	0.7843
AT5G15810			N2,N2-dimethylguanosine tRNA m...		Lus10005696 [exp]	16.7	0.7984
AT4G19010			AMP-dependent synthetase and l...		Lus10022542 [exp]	29.7	0.7251
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	40.2	0.7362
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	40.6	0.7475
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10037028 [exp]	41.0	0.7580
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10037428 [exp]	41.9	0.7345

Compare expression of checked genes

Lus10019555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.