Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43070 245 / 2e-77 ATSPPL3 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) AT1G05820 233 / 4e-73 ATSPPL5 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) AT1G63690 188 / 2e-55 ATSPPL2 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) AT1G01650 180 / 2e-52 ATSPPL4 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) AT2G30290 53 / 1e-07 VSR2, VSR1;2, BP80-1;2, AtVSR2 VACUOLAR SORTING RECEPTOR 1;2, binding protein of 80 kDa 1;2, VACUOLAR SORTING RECEPTOR 2 (.1.2) AT2G14720 46 / 2e-05 VSR4, VSR2;1, MTV4, BP80-2;1, VSR-2 VACUOLAR SORTING RECEPTOR 2;1, binding protein of 80 kDa 2;1, vacuolar sorting receptor 4 (.1.2) AT2G14740 46 / 2e-05 VSR2;2, BP80-2;2, ATVSR3 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001154 [exp] 448 / 2e-156 AT1G05820 563 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 5, SIGNAL PEPTIDE PEPTIDASE-LIKE 5 (.1.2) Lus10024653 [exp] 197 / 4e-59 AT1G63690 744 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10036364 [exp] 189 / 7e-57 AT1G01650 608 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10031104 [exp] 191 / 1e-56 AT1G63690 872 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10032285 [exp] 181 / 2e-51 AT1G63690 713 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Lus10014769 [exp] 181 / 4e-51 AT4G00370 662 / 0.0 anion transporter 2, Major facilitator superfamily protein (.1) Lus10017796 [exp] 177 / 6e-51 AT1G01650 802 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10018834 [exp] 129 / 1e-33 AT1G01650 685 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Lus10035484 [exp] 84 / 6e-18 AT1G63690 364 / 3e-122 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G232200 [exp] 286 / 5e-93 AT2G43070 626 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.014G150000 [exp] 266 / 1e-85 AT2G43070 570 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 3, SIGNAL PEPTIDE PEPTIDASE-LIKE 3 (.1) Potri.003G128500 [exp] 201 / 3e-60 AT1G63690 857 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.002G160500 [exp] 196 / 2e-58 AT1G01650 838 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.001G103100 [exp] 190 / 2e-56 AT1G63690 829 / 0.0 SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (.1.2) Potri.014G085300 [exp] 187 / 3e-55 AT1G01650 810 / 0.0 ARABIDOPSIS THALIANA SIGNAL PEPTIDE PEPTIDASE-LIKE 4, SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (.1.2) Potri.016G137350 [exp] 54 / 5e-09 AT3G52850 212 / 2e-66 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.006G108800 [exp] 54 / 5e-08 AT3G52850 1026 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.016G137300 [exp] 53 / 1e-07 AT3G52850 984 / 0.0 VACUOLAR SORTING RECEPTOR 1;1, Green fluorescent seed 1, binding protein of 80 kDa 1;1, ARABIDOPSIS THALIANA EPIDERMAL GROWTH FACTOR RECEPTOR-LIKE PROTEIN, vacuolar sorting receptor homolog 1 (.1) Potri.019G082500 [exp] 52 / 2e-07 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10019557 pacid=23169926 polypeptide=Lus10019557 locus=Lus10019557.g ID=Lus10019557.BGIv1.0 annot-version=v1.0 ATGGAGGCTCAATTGAAGATCGAAGCTTGGATTGGAACTAGAAGACCGAAAGTGAAGATTGGAGCGACTTTGATTCATTATCTCTTCAACAAGATGATGG TGAAGGTTGAAAATTGGGTTAATGGCGTCGAAGGTGAAACTTATAGTGGGGTGACTGCAAGATTTGGTGCAGTGCTACCTTACGAGAGTGATAAAAGTGT GAAATTATCAGCTGTTCTCTCAAATCCATTGACATGTTGTTCGAAACCTTCTTCAAAGTTATCCAACTCTTTTGTAATATCGGCACGAGGAGATTGTTCT TTCAATACAAAAGCAAACATTGCACAAGCAAATGGAGCAAAAACCTTGTTAGTGATAAATGAAGAAGAAGGATTTTTGGAGATGGGTTGCGATGAAGATA CTTCAGCTACAAATATAACGATTCCAATAGTGATGGTACCAAAATCAACTGGTGAAAGTTTCAAAAAATCAATACTGAATGGGAAAAAATTGGAAGTGGG AGTGTATGCCCCGAATCGTCCAGTAGTGGACATATCGGTTATGTTCTTATGGTTGATGGCTACATCAACAGTTGCCGCAGCTTCACTTTGGCAAGAGCTT AAAGATACTAATGATAATAACCAGACTACTTGTGATGCTGACTTTTCTCCAAAGAGTAATGGTGAAAATGGGTCAACAAGGAAAGATGGGAACGAGGAAG AAATAATAAACATTGATGTGAAAAGTGCAATTGTGTTTGTGTTCAGCGCATCTACTTTTTTGGTTTTACTCTTCTTCTTTATGTCCACTTGGTTCGTCTG GCTCCTCATTGTGCTCTTCTGCATCGGTGGTGTTGAGGGCATTTCCTTAATGATAACAATTTTACAAACTGCAAGGTTGCCTAATATTAAGGTACTAACT AATTCTGATATATAG
AA sequence Show only first row Show all	>Lus10019557 pacid=23169926 polypeptide=Lus10019557 locus=Lus10019557.g ID=Lus10019557.BGIv1.0 annot-version=v1.0 MEAQLKIEAWIGTRRPKVKIGATLIHYLFNKMMVKVENWVNGVEGETYSGVTARFGAVLPYESDKSVKLSAVLSNPLTCCSKPSSKLSNSFVISARGDCS FNTKANIAQANGAKTLLVINEEEGFLEMGCDEDTSATNITIPIVMVPKSTGESFKKSILNGKKLEVGVYAPNRPVVDISVMFLWLMATSTVAAASLWQEL KDTNDNNQTTCDADFSPKSNGENGSTRKDGNEEEIINIDVKSAIVFVFSASTFLVLLFFFMSTWFVWLLIVLFCIGGVEGISLMITILQTARLPNIKVLT NSDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10019557 [exp]	0	1

Compare expression of checked genes

Lus10019557 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.