Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025346 [exp] 77 / 2e-17 ND / Lus10024976 [exp] 78 / 5e-17 AT1G40087 91 / 5e-20 Plant transposase (Ptta/En/Spm family) (.1) Lus10035238 [exp] 75 / 7e-17 AT1G40087 42 / 2e-04 Plant transposase (Ptta/En/Spm family) (.1) Lus10032752 [exp] 72 / 9e-17 ND / Lus10003828 [exp] 74 / 2e-16 ND / Lus10040052 [exp] 68 / 8e-15 ND / Lus10003946 [exp] 68 / 2e-14 ND / Lus10021587 [exp] 69 / 3e-14 AT1G40087 42 / 1e-04 Plant transposase (Ptta/En/Spm family) (.1) Lus10034923 [exp] 65 / 1e-13 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019559 pacid=23169908 polypeptide=Lus10019559 locus=Lus10019559.g ID=Lus10019559.BGIv1.0 annot-version=v1.0 ATGGAAGAAGTTGTCGCCCCAATTGAAGACACGGGCTTGGGAGCAGTTTGTGCTAGAGACTATCAGCAACTAGAGCGGGAAGGAGCACCGACTGAGGTTG GGCCTAATGACTCATTGGCTCAAACACTAAACAAGCCAAAGCATCGAGGCCACGTTCGGATGATGAGTTTGGGGTTTACCCCACAATGGAGCCTATGCAG CAGCAACAACCATCTCAACAATAGCAACAAGCTCATGAGACCAATCTTATGGGTCACTTTCTTCAAGAATCGTGTCAATATTGCCAGCGGCACACCAAAC AGATGGGGAGAAAGAGTGGAAGAAGAAGAAGAAGAAAGAAAGATGGAGCAAGGTGCATTTGATTTGAATCCCGACAATGTCGACAACAATCTTGTATCTA AATTCTTTGTCGATTTGAATTTCGATGATGCCAACAACAACCTCATTCTTGAACTCTCCGTCGATTTGAATCCCGACGATCCCATCAACAACACCATTCC TGAACTCTTCGACAATTTGAATCCCGACGATGCTGATAACAACCTCATACCTGAATTCTCCGTTGATTGA
AA sequence Show only first row Show all	>Lus10019559 pacid=23169908 polypeptide=Lus10019559 locus=Lus10019559.g ID=Lus10019559.BGIv1.0 annot-version=v1.0 MEEVVAPIEDTGLGAVCARDYQQLEREGAPTEVGPNDSLAQTLNKPKHRGHVRMMSLGFTPQWSLCSSNNHLNNSNKLMRPILWVTFFKNRVNIASGTPN RWGERVEEEEEERKMEQGAFDLNPDNVDNNLVSKFFVDLNFDDANNNLILELSVDLNPDDPINNTIPELFDNLNPDDADNNLIPEFSVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019559 [exp]	0	1
					Lus10002716 [exp]	46.1	0.7769
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	62.5	0.7367
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	67.5	0.7201
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	69.5	0.7311
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Lus10004716 [exp]	88.4	0.6971
					Lus10008111 [exp]	125.8	0.7126
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	126.6	0.7110
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Lus10032353 [exp]	197.7	0.6973
AT4G32750			unknown protein		Lus10024698 [exp]	204.5	0.7039
					Lus10006808 [exp]	210.6	0.6859

Compare expression of checked genes

Lus10019559 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.