Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019560 pacid=23169916 polypeptide=Lus10019560 locus=Lus10019560.g ID=Lus10019560.BGIv1.0 annot-version=v1.0 ATGACAAACGTGATTGTTGTTGTTGTCAACGGAGTTCTGGTACTCCCAACAAGTGAGAAGAACGATCAGATTAGTAACAGAGCACAAACAAAGATTCTAG GCTCTGGCTCTAGATCCGTCGTCGATTCAAGCCTTGGAGACCATAGCTTCTCTTCTGGAAACAATCCGGTGCTCTACAACTTGATCCTTCGGGACTGGAA GCTTTCCGAGACGGCGTTGTTGCGGATCAGTAAGGAGAGGAGGAAGCTTCAAGCCTATGGTGTTGCAGATCGAAGAATTGAGAGAGTGGAGGAGGAGAGG ATTGGCCGTGGCGACGAAGGAAGCATGTGGTGTTGCAGATCGAAGAATCGAGAGAGTGGAGGAGGAGAGGAGCGCTTGCGGTGA
AA sequence Show only first row Show all	>Lus10019560 pacid=23169916 polypeptide=Lus10019560 locus=Lus10019560.g ID=Lus10019560.BGIv1.0 annot-version=v1.0 MTNVIVVVVNGVLVLPTSEKNDQISNRAQTKILGSGSRSVVDSSLGDHSFSSGNNPVLYNLILRDWKLSETALLRISKERRKLQAYGVADRRIERVEEER IGRGDEGSMWCCRSKNRESGGGEERLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019560 [exp]	0	1
					Lus10032858 [exp]	15.9	0.7908
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10037905 [exp]	17.5	0.7502
AT5G06130			chaperone protein dnaJ-related...		Lus10016993 [exp]	23.9	0.7399
					Lus10021668 [exp]	25.2	0.7850
AT4G36980			unknown protein		Lus10009350 [exp]	35.9	0.7742
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	50.7	0.6869
					Lus10023010 [exp]	57.4	0.7571
					Lus10017572 [exp]	89.3	0.7375
AT4G37640		ACA2	calcium ATPase 2 (.1)		Lus10002458 [exp]	103.3	0.7057
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10000428 [exp]	106.7	0.7242

Compare expression of checked genes

Lus10019560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.