Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43120 436 / 8e-155 RmlC-like cupins superfamily protein (.1) AT3G59220 382 / 6e-134 ATPIRIN1, PRN1, PRN pirin (.1) AT1G50590 360 / 8e-125 RmlC-like cupins superfamily protein (.1) AT3G59260 334 / 3e-115 pirin, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001159 [exp] 653 / 0 AT2G43120 436 / 1e-154 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150200 [exp] 506 / 0 AT2G43120 461 / 9e-165 RmlC-like cupins superfamily protein (.1) Potri.002G231900 [exp] 498 / 3e-179 AT2G43120 452 / 6e-161 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02678 [flax] [poplar] Pirin Pirin CL0029 [flax] [poplar] Cupin PF05726 [flax] [poplar] Pirin_C Pirin C-terminal cupin domain
Representative CDS sequence Show only first row Show all	>Lus10019561 pacid=23169918 polypeptide=Lus10019561 locus=Lus10019561.g ID=Lus10019561.BGIv1.0 annot-version=v1.0 ATGAAAGCTGTGTTCCAGAGACTGATATCGTCAAGCACCCAGATTGGCTGTAGGAAGAAAGTTGCATCTTTTCCATTAATCAGAAGCGCTAATATGTCTG AATCCTCTGCCTTTGATTCTCCGAGATTGGTGACCAAGAAGGTCCTTGCTAAGCTTCAGCGTGAAGGGGATGGTGCTTCTGTCAGGAGAAGCATTGGAAG GAGTGAGCTCAGGTCTCTGGACCCTTTCCTCATGTTGGATGAGTTTTCAGTCTCAGCTCCTGCTGGATTTCCTGATCATCCACACAGAGGTTTTGAGACT GTTACATACATGCTGGAGGGATCATTCACTCATCAAGATTTTTCTGGGCATAGAGGGACTATTCATGCCGGGGATGTTCAATGGATGACAGCAGGTAGAG GGATAGTCCATTCAGAAATGCCTGCAGGAGAAGGAGTCCAGAGAGGCCTTCAGCTTTGGATAAACCTCTCTTCTCAACATAAAATGATTGAGCCAAGGTA TCAGGAACTTCTGAGGCAGGACATCAAAAGAGCAGAGAAAGACGGGGTTGAAGTCCGAATCATAGCAGGGGAATCAATGGAAATCGAGTCTCCAGTTTAT ACAAGGACCCCAACAATGTACCTTGATTTCACACTGCAACCAAGGTCCCAAATGCACCAGCCCATTCCAGAATTATGGAACGCATTCATTTACGTCATTG AAGGTGAGGGAGTGTTTGGGATCCCAAACTCCTCACCAGTTGAAGCACATCATACACTCGTTCTAGGCCCTGGTGAAGGAATGAGCGCCTGGAACAACTC CTCTTCCAAACCCTTGAGGTTTGTCTTGATTGCAGGCCAGCCACTTAACCAACCAGTGGTGCAGCATGGTCCTTTTGTCATGAACACAGAATCTGAAATC CACCAAGCAATTGAAGATTACCACTACTCCAAAAATGGGTTTGAAATGGCGCAGTATTGGAGTTCCCAATAG
AA sequence Show only first row Show all	>Lus10019561 pacid=23169918 polypeptide=Lus10019561 locus=Lus10019561.g ID=Lus10019561.BGIv1.0 annot-version=v1.0 MKAVFQRLISSSTQIGCRKKVASFPLIRSANMSESSAFDSPRLVTKKVLAKLQREGDGASVRRSIGRSELRSLDPFLMLDEFSVSAPAGFPDHPHRGFET VTYMLEGSFTHQDFSGHRGTIHAGDVQWMTAGRGIVHSEMPAGEGVQRGLQLWINLSSQHKMIEPRYQELLRQDIKRAEKDGVEVRIIAGESMEIESPVY TRTPTMYLDFTLQPRSQMHQPIPELWNAFIYVIEGEGVFGIPNSSPVEAHHTLVLGPGEGMSAWNNSSSKPLRFVLIAGQPLNQPVVQHGPFVMNTESEI HQAIEDYHYSKNGFEMAQYWSSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	1.7	0.8862
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	2.8	0.8707
AT1G27100			Actin cross-linking protein (....		Lus10036693 [exp]	4.5	0.8785
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	5.3	0.8727
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	6.0	0.8794
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	6.3	0.8878
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	7.1	0.8449
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	8.1	0.8981
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	11.2	0.8416
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	12.7	0.8293

Compare expression of checked genes

Lus10019561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.