Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010393 [exp] 118 / 4e-31 ND / Lus10026801 [exp] 117 / 8e-29 AT5G24530 142 / 7e-38 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10020449 [exp] 107 / 2e-28 ND / Lus10030114 [exp] 100 / 2e-25 ND / Lus10043133 [exp] 98 / 9e-23 AT1G04760 290 / 2e-98 vesicle-associated membrane protein 726 (.1) Lus10012405 [exp] 92 / 3e-21 ND / Lus10010621 [exp] 86 / 8e-20 ND / Lus10039395 [exp] 83 / 1e-18 ND / Lus10033089 [exp] 86 / 5e-18 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019563 pacid=23169927 polypeptide=Lus10019563 locus=Lus10019563.g ID=Lus10019563.BGIv1.0 annot-version=v1.0 ATGAGTATGTTATTTGATTGTCTGGTGGCCAAAACTAATCCGACAAAGAAGGGTTGTGCTAACGAAAAGGCAGTTGCCACAAAGCAACCAATTGTAAAGA AGGGCCCCCTAGGGGAGATTGGCTTGAAGAAAAAGAAGGGAAATGGCAAGCCATTCTGTTGCAAAATTGGACAGTTGGTGGCTGCCAATGATCTACTTGA AAACGACCACCCGCATCGTACTAACATCTGTCTATGTCTCAATGACGCTGGCTTCTATGGGTTGTTGTATCTACAACTAGAGATGATTAATAAGGAGGTT CCTCAATTCCTCCTCCAATCCTTTGTTCCTGAACTTGGTCTTTTCAAGTTCCCGGATGGTCAGCTGTTGGGCGTAACGTCAGAGGTCGTGCACCATGTAT ATGGTCTGCCCTTGTATACAAGTCTAGCCGACGTGGATGTCCAACATTTCGGGCTAAGGGTATTGAAGCAGTTTGAAAGGGTGACCGGTACAAAGAGCAA TAAGTACAATCACATCAACATAGTTCAACTCCAAGCTGCAATGAAGAATTGTAAAGATCCCACGGCTTATACAAAGTTGTACATGTTGCTTGCCCTTGAG TCGTTGCTTGTTCCAACAAATACCCGGTGGGTTATAATGAAGTTTTCCAAGTATCTTCACCTTCACAACTTTGAGATTGCTAATCCTAATTGGGCGGCTG ACGTCTCAAATCATCTGCTAAGAGGTCTGGAGGACTACTATAAGAATCAGAAGGCGTCCTATCCCAGCAGGGACATGAACTTCATGGTGGGGAGCCTCGT GGACCAAGGTATCATTCACTCTGGAGACAAAAGGAGCAGCCACGTTGACTTGGTCAGTCGGATTGAAATGTGGAAGGATACCTTTTGGAAGGCTAAAGTC AATTTCAAGGAAGCAGGGAACGTCATTCGCACTATCATATCAGAGCATCCAGACGGCCTTCCATTTGAGTGCCATGGCGATGAAGGTCACATTTTCCATT TGAAGAACAATGGTTGGCAGTTTGAACCTAAGAAAGTATGTGTAACGTTGTTATGGCTATTGTACATTGATGTTATGCCTATTGTTTAG
AA sequence Show only first row Show all	>Lus10019563 pacid=23169927 polypeptide=Lus10019563 locus=Lus10019563.g ID=Lus10019563.BGIv1.0 annot-version=v1.0 MSMLFDCLVAKTNPTKKGCANEKAVATKQPIVKKGPLGEIGLKKKKGNGKPFCCKIGQLVAANDLLENDHPHRTNICLCLNDAGFYGLLYLQLEMINKEV PQFLLQSFVPELGLFKFPDGQLLGVTSEVVHHVYGLPLYTSLADVDVQHFGLRVLKQFERVTGTKSNKYNHINIVQLQAAMKNCKDPTAYTKLYMLLALE SLLVPTNTRWVIMKFSKYLHLHNFEIANPNWAADVSNHLLRGLEDYYKNQKASYPSRDMNFMVGSLVDQGIIHSGDKRSSHVDLVSRIEMWKDTFWKAKV NFKEAGNVIRTIISEHPDGLPFECHGDEGHIFHLKNNGWQFEPKKVCVTLLWLLYIDVMPIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019563 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	6.2	0.7840
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	9.6	0.7780
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	12.6	0.7356
AT4G18340			Glycosyl hydrolase superfamily...		Lus10038501 [exp]	13.0	0.7400
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	13.6	0.7399
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10018453 [exp]	16.2	0.6998
					Lus10039535 [exp]	19.3	0.6441
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	22.5	0.6433
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10033082 [exp]	24.7	0.7016
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	25.5	0.7233

Compare expression of checked genes

Lus10019563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.