Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05790 254 / 6e-81 lipase class 3 family protein (.1.2) AT2G42450 76 / 4e-15 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 52 / 2e-07 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 48 / 4e-06 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024878 [exp] 74 / 1e-14 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 74 / 3e-14 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013158 [exp] 58 / 3e-09 AT3G14075 754 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10008121 [exp] 58 / 3e-09 AT3G14075 763 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10015680 [exp] 54 / 6e-08 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10016834 [exp] 54 / 7e-08 AT4G16070 750 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Lus10037710 [exp] 53 / 2e-07 AT4G16070 764 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G150800 [exp] 255 / 5e-79 AT1G05790 622 / 0.0 lipase class 3 family protein (.1.2) Potri.002G231567 [exp] 239 / 1e-77 AT1G05790 229 / 2e-71 lipase class 3 family protein (.1.2) Potri.005G222000 [exp] 76 / 3e-15 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 55 / 2e-08 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 48 / 4e-06 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 47 / 8e-06 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10019566 pacid=23169915 polypeptide=Lus10019566 locus=Lus10019566.g ID=Lus10019566.BGIv1.0 annot-version=v1.0 ATGGGGTTTCTATCGTCATTGTTGGGAGTTGGATGCGAATGTGAAGGATACAGTCTGCGGATAGTTGGCCATTCCCTTGGAGGCGCCATTGCTTCCATGC TCGGATTAAGATTAAAACACAAGTTTCCAAACCTGCATGTCTATGCGTACGGTCCACTTCCATGTGTGGATTCAGTAATCGCCGAGGCATGCTCCGACTT CATTACAAGCATTGTACATGAGAATGAATTTTCGACAAGGCTGTCAGTTGGATCCATCATGAGGCTTCGTGCAGATGCAGTGATGGCAGTTTCACAATAT TCTAAAGCCGACGCTACTTTGATTTTCAGACTTGCCCGCCGCTTTCTTTTTATCAATAGGTTTCAAAACCGCTTGATGGACCATCATCCTAATCATCAAC ATAATTCCACCGCTATTACTACTACTACTACTTCACGAGCTCTCACTATTTCTCATGCAGAAAATGAAGAATATGAGAAACAAGGTATAATTTGGGAGGA GGGTGACGTGGAGATTGATATGAGAAATGATCCGGTAAATGAAATGATAACTAGGAATACATTTGATGACACGATATCACAACTTCTAGCAATGACGACT CCAGCGTTGGAAAGTAACTCGACCAATGAAACAGATCATAAACAAGAGGCCGATGTATTTTTACCAGGGCGCATCATCCATCTAGTATCACAGCTCCCAA ATGATGCCAAAGTTTGGAGCATATTGCAAAGCACACAATATGACTACAAAGCATATTTAGCTAAAAGAGAACAGTTTCTTGATATTGTGGTTTCACCCTA CATGTTCATTGACCATTTACCTTGGAGATGTCACCATGCACTTAAAATGATACTAGAATTCAGAAAGGGTGAGAGGATGAGACAAGTTCATGTACCAAAT CATGTGATTTAA
AA sequence Show only first row Show all	>Lus10019566 pacid=23169915 polypeptide=Lus10019566 locus=Lus10019566.g ID=Lus10019566.BGIv1.0 annot-version=v1.0 MGFLSSLLGVGCECEGYSLRIVGHSLGGAIASMLGLRLKHKFPNLHVYAYGPLPCVDSVIAEACSDFITSIVHENEFSTRLSVGSIMRLRADAVMAVSQY SKADATLIFRLARRFLFINRFQNRLMDHHPNHQHNSTAITTTTTSRALTISHAENEEYEKQGIIWEEGDVEIDMRNDPVNEMITRNTFDDTISQLLAMTT PALESNSTNETDHKQEADVFLPGRIIHLVSQLPNDAKVWSILQSTQYDYKAYLAKREQFLDIVVSPYMFIDHLPWRCHHALKMILEFRKGERMRQVHVPN HVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05790			lipase class 3 family protein ...		Lus10019566 [exp]	0	1

Compare expression of checked genes

Lus10019566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.