Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05785 129 / 6e-37 Got1/Sft2-like vescicle transport protein family (.1.2) AT5G01430 97 / 2e-24 Got1/Sft2-like vescicle transport protein family (.1.2) AT3G49420 97 / 2e-24 Got1/Sft2-like vescicle transport protein family (.1) AT3G03180 83 / 2e-19 Got1/Sft2-like vescicle transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008070 [exp] 195 / 5e-61 ND / Lus10010034 [exp] 185 / 8e-58 ND / Lus10011650 [exp] 162 / 5e-49 ND / Lus10029474 [exp] 117 / 9e-32 ND / Lus10011636 [exp] 116 / 4e-31 ND / Lus10025494 [exp] 91 / 2e-22 AT3G49420 218 / 2e-74 Got1/Sft2-like vescicle transport protein family (.1) Lus10026704 [exp] 91 / 1e-21 AT3G49420 225 / 1e-76 Got1/Sft2-like vescicle transport protein family (.1) Lus10000785 [exp] 76 / 2e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151000 [exp] 145 / 7e-43 AT1G05785 157 / 3e-50 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.007G124400 [exp] 89 / 2e-21 AT5G01430 199 / 5e-67 Got1/Sft2-like vescicle transport protein family (.1.2) Potri.017G036000 [exp] 87 / 7e-21 AT5G01430 201 / 2e-67 Got1/Sft2-like vescicle transport protein family (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04178 [flax] [poplar] Got1 Got1/Sft2-like family
Representative CDS sequence Show only first row Show all	>Lus10019570 pacid=23169920 polypeptide=Lus10019570 locus=Lus10019570.g ID=Lus10019570.BGIv1.0 annot-version=v1.0 ATGGCCTACGAATTGACTGAGCAACAGAGGGTCGGATTAGGTCTTATCGGTTTTGGTATCTTTTTCTCATTTCTTGGTGTCATCCTGTTCTTTGACAGAG GGTTACTTGCCCTTGGAAATGTATTATGGCTCACAGGGGTAGCTATTTTGTTAGGCTGGTATTCGACATGGAGGCTCTTTACTAACAGAGAAAATTATAA GGGTTCTGTATCGTTTGTTCTGGGACTGTTCTTCCTTTTTGTTCGCTGGCCAATTGCTGGTATAGTCTTGGAAATATATGGATGCTTTGCCCTTTTTGGA GGGTTTTGGCCGTCTATGAAGGCGGTCCTTTATCAGATTCCAGTAATTGGATGGATCATACAATATCCAGTTATGGAGGATGAGCTGGTAGTGATGGAAA GGAGTCACGTTCTCTTTAAGGGTTCTTGGCCAACCAACCCAGCTATTCAGCCTGAAGACGACCCTATTCATTGGGTGGAAATAAAACAACTGCTAATGGT GCTAAACATTATAGAACATGACCCAATCTCGACCATCCTACAGTCAGCCGATAGCTACTACTGCGACGGCAGAATCAAGGAAAGCATCGGGATCCTCTCG GAGATACAGATTGAGAACACCTTCTACCTCGACGCAGAGTATAACCAGGCAGTCTTCAGAGATGTCAACTTCAGGAGAAGCTTTGGAGTACCGCTTTACG GAGCCGACACTGCTGATGAGGAAGAGTACGTTATGTGGTCGGCTCAGCGACAACATGAAGCGTACGGCGATGAACCACCGTTCCATAACCTTGCCCTAAA CCTGCCAAACTATTCGATTAGGGTACAGGAGTACGAAACCGATGTGTTAAGGGGCACCTGGTCAATGTTTACCGATGAAGAGAAAGTATTATTTGGTGAG AAATATGGATGTCTGTTTGATCTTAGATATTTCGCCACTTCCCAAGGAATATGGATCAATCCTCTGTCTGAGGGACCTCCCACTGGGCAAGGTATACACA ACTTAATCTAG
AA sequence Show only first row Show all	>Lus10019570 pacid=23169920 polypeptide=Lus10019570 locus=Lus10019570.g ID=Lus10019570.BGIv1.0 annot-version=v1.0 MAYELTEQQRVGLGLIGFGIFFSFLGVILFFDRGLLALGNVLWLTGVAILLGWYSTWRLFTNRENYKGSVSFVLGLFFLFVRWPIAGIVLEIYGCFALFG GFWPSMKAVLYQIPVIGWIIQYPVMEDELVVMERSHVLFKGSWPTNPAIQPEDDPIHWVEIKQLLMVLNIIEHDPISTILQSADSYYCDGRIKESIGILS EIQIENTFYLDAEYNQAVFRDVNFRRSFGVPLYGADTADEEEYVMWSAQRQHEAYGDEPPFHNLALNLPNYSIRVQEYETDVLRGTWSMFTDEEKVLFGE KYGCLFDLRYFATSQGIWINPLSEGPPTGQGIHNLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05785			Got1/Sft2-like vescicle transp...		Lus10019570 [exp]	0	1
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	2.0	0.8514
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	4.9	0.8149
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10018934 [exp]	6.9	0.7597
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	15.7	0.7667
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	16.2	0.7666
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10016510 [exp]	17.7	0.7735
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	18.3	0.7682
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10028636 [exp]	20.9	0.6622
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	25.3	0.7515
AT4G29660		EMB2752	embryo defective 2752 (.1)		Lus10015598 [exp]	29.4	0.7158

Compare expression of checked genes

Lus10019570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.