Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43160 421 / 5e-133 ENTH/VHS family protein (.1.2.3.4) AT3G59290 359 / 1e-108 ENTH/VHS family protein (.1) AT5G11710 144 / 6e-36 ENTH/VHS family protein (.1) AT3G23350 65 / 3e-11 ENTH/VHS family protein (.1) AT3G46540 61 / 9e-10 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025527 [exp] 753 / 0 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 713 / 0 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 147 / 8e-37 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1) Lus10005498 [exp] 146 / 6e-36 AT5G11710 489 / 4e-166 ENTH/VHS family protein (.1) Lus10021173 [exp] 64 / 3e-10 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10011810 [exp] 63 / 4e-10 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10040824 [exp] 61 / 2e-09 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 59 / 7e-09 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G151300 [exp] 598 / 0 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.002G231100 [exp] 583 / 0 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 142 / 2e-35 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1) Potri.001G239200 [exp] 61 / 1e-09 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 59 / 6e-09 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 44 / 0.0003 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10019571 pacid=23169914 polypeptide=Lus10019571 locus=Lus10019571.g ID=Lus10019571.BGIv1.0 annot-version=v1.0 ATGAACCCTGGGGTCCTCATGGATCACTTCTTGCAGATATCTCACAAGCTACCAAAAACTAGTAACGTTCCGCTTCCTTTCTTTTGGTGCTTCAGATTGG ATTCTTCAATTATAGACTTATGTTTCAACTATTCGTGCAGTCATGAGTATCAGATGATCGTGGCTGTTTTATGGAAACGGATTAATGACACTGGCAAGAA TTGGCGACATGTCTATAAGGGTTTGACTGTTTTGGAGTATCTAGTGGCTCATGGGTCAGAACGTGTTATAGATGACATAAAAGAACACGCTTATCAGATA TCGGCATTGTCAGATTTTCAGTATATTGATTCAAGCGGGAGGGACCAAGGTAGCAATGTCCGGAAGAAATCTCAAAATCTTGTGGTCCTAGTGAATGATA GAGAAAGGATTATTGAAGTTAGACAGAAAGCTGCTGCTAACCGGGAAAGGTTCCGCAGCCCGTCAGCTGGCGGAATGTACAGAACTGGTTCTTCCGGTGG AGAATATGGTGACCGATATGATGATGATCGCTATGAGGGCCGCTATGGAAGCAGGGATGAAGATTGGAATGGATATGGAAGAGAACGAGAGAATAATTAT CGGGACAATGACAGTTCTGGTAAGTACAGGGATTCCTACAATAGAGGTGGAGCAAGAGAAGATGAACGGTATGGTCGGGATGGATATAGGGATGATGAAT ATAGAGGAAGAATTCGTAGCAATGATGGCTATGGCTCAAGAGGAAGGAGTTCTGATAGAGACAGAGATCGTGGTTATGATGATGATGGCCAATTCTCATC TCGTGGTAGCTGTGCCAGAGCTGATGATCAATCTCAGGATGGGAGTGGCCTTCAAAGAAAATATTCCGAGCAAAATATTGGTGCACCTCCTAGTTATGAA GAAGCTGTGAATGATGCTCATAGTCCTGTCCACAGCGAGAAAAGGAATGGAGAAAGTTCAGCACCATCTGGCCCGGCAGCATCTTCTCCGCTGGCTTCCC AATCTTCTTCCCCACCTGCTCCTCAAGCTTCCCAGTCTTCAAATAATAATGTCATTCAAGAATCTACTGGTTTCAGCTCATTTGTATCTCCAGCCAACCA AGAAGTTGTAGTAGATGAATTTGATCCACGTGGTTCTTTTGCAGCTTTCCCCACTGCCGCAGCAGTTCCAGCTGTCTCGACTGCTTCCACGACTGGAAAC AATGCTGAAATGGATTTGCTTGGTTTTCTGTCAGAATCATTTGGTCCATTGGCGATTGTCCCAGCTTCTTCTTCTCCCACTGCCTCTGAGGTGGATATCC AGTCAAGTTTCTTAGGACCCTCATTTGCTTCCACCCAACCACCATCTACATTTTCCAATCAAGGATTCGAGGATCCATTTGGGGACACTCCCTTCAAGGC TGCTCTTTCCTCGGAATCTATTACACAGCTAAAGCAAACTGAAGTTTCTGATGTGCCGTTACAGAATTCTGCAAATCAATATTCTGAACTGCAGCATGCA TCTGTGCCGAATAGAGAAATGGAGAAAAGCTTAAACTTTGATGACCCTGCCTCCAGCTTGACTTATTCAGCACCTAATTTTCAGTCTACCTCAGCTCATT CACAGTTTTTGCCTCGAGGACTTTCGTCTTCAAATCAAGAAATTGATATACTGGCAGATATCCTTCCGCTGTCTGGACCATCTGGGGCAGCACCACAAAC CGGGTTTCCAGCTCAAACTAGTCAAACCACTTCGCCAGGTGGGCATTTTTATGGAAACTTCAATTCCCAACCAGGCCTTACCCTCCCAGGCACTGCACCA AACATGGCCCCTCCAACTTTGCAGTTCAGCAGTGGTAATTATATGCCACATGGAGGTTTCATGGGTCCAACTAATCCGAACATGGCTATGCAAAATCTAG TGGGACCAGCTACAGAATTTGGCAATGGGAACCGACTCCAAGAATCAGGTTATGGAGCCCCAGGTAGACGTCAAATCCCTCAACAAATAGCTTTGCCATC TGGACAACTAAACAATGGGAACATGTTCCCCAATCAGAGTGCTTCCAGTTCAACGTCTCCACAAGTAGTTGCTTCTGCAGGACCAAACGCTCATCCTAAC TCCGATGTCTTAGGTGGTTTCTTTGCACAAGGAGACAGCACTCCAGTCGCTCCGTCCAGTCACACTTTGGGTTCTCAGCCCAGTCTCTCTTCGACAACTG GTGCAGTTGTACCGGTCGTGCATCCATCGAAGGACAAATTTGAAACAAAATCAACAGTTTGGACCGATACGCTTAACAGAGGGCTGGTCAATTTGAATAT ATCAGGACCTAAGATCAATCCGTTATCGGACATTGGAATCGATTTTGATGCAATCAATCGCAAGGAGAAAAGAATGGAGAAACCAACTACTACAACCGTG ACATCTACTGTCACTATGGGGAAGGCCATGGGATCTGGTTCTGGAATGGGTCGTTCGGGTGCAACGGCTATGATGCTGGCCTCAAACCCGATGATGGGCC CCACTGGGGGTATGAATATGGGGATGGGCATGAGCATGAGCATGGGGATGGGCGGTGCTCCTGTTTCGGGCATGGGGATGGGCGGTGCTCCTAGTTCGAG CATGGGCGGCTATGGAGGTGGGATGGCTACAAGCATGGGGATGGGGCAGAGCATAGGTATGCAGCCTCCGCGTGGATATAACAACATGAGGGGTGCGGGT GGTTACCCTCAACAGCCATACGGCGGAGGTTTTCAGTGA
AA sequence Show only first row Show all	>Lus10019571 pacid=23169914 polypeptide=Lus10019571 locus=Lus10019571.g ID=Lus10019571.BGIv1.0 annot-version=v1.0 MNPGVLMDHFLQISHKLPKTSNVPLPFFWCFRLDSSIIDLCFNYSCSHEYQMIVAVLWKRINDTGKNWRHVYKGLTVLEYLVAHGSERVIDDIKEHAYQI SALSDFQYIDSSGRDQGSNVRKKSQNLVVLVNDRERIIEVRQKAAANRERFRSPSAGGMYRTGSSGGEYGDRYDDDRYEGRYGSRDEDWNGYGRERENNY RDNDSSGKYRDSYNRGGAREDERYGRDGYRDDEYRGRIRSNDGYGSRGRSSDRDRDRGYDDDGQFSSRGSCARADDQSQDGSGLQRKYSEQNIGAPPSYE EAVNDAHSPVHSEKRNGESSAPSGPAASSPLASQSSSPPAPQASQSSNNNVIQESTGFSSFVSPANQEVVVDEFDPRGSFAAFPTAAAVPAVSTASTTGN NAEMDLLGFLSESFGPLAIVPASSSPTASEVDIQSSFLGPSFASTQPPSTFSNQGFEDPFGDTPFKAALSSESITQLKQTEVSDVPLQNSANQYSELQHA SVPNREMEKSLNFDDPASSLTYSAPNFQSTSAHSQFLPRGLSSSNQEIDILADILPLSGPSGAAPQTGFPAQTSQTTSPGGHFYGNFNSQPGLTLPGTAP NMAPPTLQFSSGNYMPHGGFMGPTNPNMAMQNLVGPATEFGNGNRLQESGYGAPGRRQIPQQIALPSGQLNNGNMFPNQSASSSTSPQVVASAGPNAHPN SDVLGGFFAQGDSTPVAPSSHTLGSQPSLSSTTGAVVPVVHPSKDKFETKSTVWTDTLNRGLVNLNISGPKINPLSDIGIDFDAINRKEKRMEKPTTTTV TSTVTMGKAMGSGSGMGRSGATAMMLASNPMMGPTGGMNMGMGMSMSMGMGGAPVSGMGMGGAPSSSMGGYGGGMATSMGMGQSIGMQPPRGYNNMRGAG GYPQQPYGGGFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10019571 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	4.7	0.8529
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	5.2	0.8609
AT5G56890			Protein kinase superfamily pro...		Lus10027635 [exp]	6.7	0.8176
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Lus10034610 [exp]	6.9	0.8454
AT2G25790			Leucine-rich receptor-like pro...		Lus10006045 [exp]	8.4	0.8041
AT1G04200			unknown protein		Lus10039377 [exp]	9.4	0.8120
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	10.4	0.8076
AT1G04200			unknown protein		Lus10006619 [exp]	13.0	0.8215
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10035695 [exp]	15.2	0.7896
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	15.3	0.8116

Compare expression of checked genes

Lus10019571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.