Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18500 596 / 0 MAML-4, IPMS1 ISOPROPYLMALATE SYNTHASE 1, methylthioalkylmalate synthase-like 4 (.1) AT1G74040 594 / 0 IPMS2, MAML-3, IMS1 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1) AT5G23010 445 / 2e-154 MAM1, IMS3 2-ISOPROPYLMALATE SYNTHASE 3, methylthioalkylmalate synthase 1 (.1) AT5G23020 433 / 1e-149 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083100 [exp] 604 / 0 AT1G74040 981 / 0.0 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00682 [flax] [poplar] HMGL-like HMGL-like
Representative CDS sequence Show only first row Show all	>Lus10019573 pacid=23169910 polypeptide=Lus10019573 locus=Lus10019573.g ID=Lus10019573.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCTCTCCTTCGCCCTCAAGATTTTGCGTCCCCAAACCAAAACCACCGTTATCCCCTTCTTCCCTCATCCTCCACTTACGCTTCCCCCCTT CCCGCCATTTCCCCTCCTCCGCCGCCATCGCTTCCCGTCGCCTCAACACTAGTTTAGTTTCATGCTCCACTACCTCCTCCTTGTCTGTCTCCCGCCGCCG TCCTGACTACATTCCCAACCAAATCACGGACCCTCATTATGTCCGCATCTTCGATACCACGCTTCGCGACGGCGAGCAGTCCCCCGGCGCCACCATGACT TCCAAACAGAAGCTGGACATCGCCCGCCAGCTTGCCAAGCTCGGGGTGGATATTATTGAAGCTGGTTTCCCCGCGGCTTCCAAGGACGATTTCGACGGCG TGAAGGCTATTGCACAGGAGGTCGGGAATGCCGTGGATATGGATGGCTACGTCCCCGTTATCTGTGGCCTTGCTAGGTGTAATGAGAAGGATATTCGGAC AGCTTGGGATGCTGTCAAGTACGCTAAACGTCCCAGGATTCACACATTTATCGCCACCAGTCCTATTCACATGGAGTACAAGTTGAGGAAGACTAAAGAC GAAGTCGTGGAGATCGCCAGGGCCATGGTAAGCTTCGCTAGAAGTTTGGGCTGTCAAGACGTTGAGTTCAGCCCTGAGGACGCTGGCAGGTCCGACAGGG AATTTTTGTACCGAATTTTGGGTGAAGTAATCAAAGCTGGAGCAACCACTCTGAACATACCTGATACTGTTGGTATTACTTTGCCAACTGAATTTGGACA ACTAATTGCTGATATAAAAGCCAACACGCCAGGAATTGAAAATGTCATCATCTCAACGCACTGCCAAAATGATCTTGGGCTTTCTACTGCTAACACGTTG GCGGGGGCATATGCGGGTGCGAGACAAGTAGAAGTGACAATCAATGGCATTGGAGAAAGGGCTGGAAATGCTTCATTGGAGGAGGTTGTTATGGCCATAA AATGTCGTGGAGAGCATGTTTTAGGAGGTTTGTACACTGGGATTAACACTAAACACATTACCATGTCAAGCAAGATGGTTGAGGACTACAGTGGTTTGCA ACTGCAGCCTCACAAGGCTATTGTTGGAGCGAATGCTTTTGCTCATGAAAGTGGGATTCATCAGAATGAGCAGAACATTGAAAGAGGAACCAGTTAG
AA sequence Show only first row Show all	>Lus10019573 pacid=23169910 polypeptide=Lus10019573 locus=Lus10019573.g ID=Lus10019573.BGIv1.0 annot-version=v1.0 MASVSPSPSRFCVPKPKPPLSPSSLILHLRFPPSRHFPSSAAIASRRLNTSLVSCSTTSSLSVSRRRPDYIPNQITDPHYVRIFDTTLRDGEQSPGATMT SKQKLDIARQLAKLGVDIIEAGFPAASKDDFDGVKAIAQEVGNAVDMDGYVPVICGLARCNEKDIRTAWDAVKYAKRPRIHTFIATSPIHMEYKLRKTKD EVVEIARAMVSFARSLGCQDVEFSPEDAGRSDREFLYRILGEVIKAGATTLNIPDTVGITLPTEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTL AGAYAGARQVEVTINGIGERAGNASLEEVVMAIKCRGEHVLGGLYTGINTKHITMSSKMVEDYSGLQLQPHKAIVGANAFAHESGIHQNEQNIERGTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	0	1
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	1.0	0.9629
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10041071 [exp]	2.0	0.9611
AT4G26300		EMB1027	embryo defective 1027, Arginyl...		Lus10034982 [exp]	2.2	0.9503
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	3.0	0.9531
AT1G73380			unknown protein		Lus10031316 [exp]	3.2	0.9267
AT5G20045			unknown protein		Lus10019440 [exp]	3.5	0.9386
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	3.5	0.9247
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	4.0	0.9522
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Lus10010496 [exp]	5.5	0.9224
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10019401 [exp]	8.1	0.9107

Compare expression of checked genes

Lus10019573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.