Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18500 388 / 4e-133 MAML-4, IPMS1 ISOPROPYLMALATE SYNTHASE 1, methylthioalkylmalate synthase-like 4 (.1) AT1G74040 382 / 8e-131 IPMS2, MAML-3, IMS1 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1) AT5G23010 112 / 1e-28 MAM1, IMS3 2-ISOPROPYLMALATE SYNTHASE 3, methylthioalkylmalate synthase 1 (.1) AT5G23020 110 / 9e-28 IMS2, MAM-L, MAM3 METHYLTHIOALKYMALATE SYNTHASE-LIKE, 2-isopropylmalate synthase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G083100 [exp] 399 / 2e-137 AT1G74040 981 / 0.0 SOPROPYLMALATE SYNTHASE 2, 2-isopropylmalate synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08502 [flax] [poplar] LeuA_dimer LeuA allosteric (dimerisation) domain
Representative CDS sequence Show only first row Show all	>Lus10019574 pacid=23169901 polypeptide=Lus10019574 locus=Lus10019574.g ID=Lus10019574.BGIv1.0 annot-version=v1.0 ATGGATTCAGATTTAGATCTCTGGTACCATAAAAAGTTTGAGAAGGATGGAATGTTAAAACATAAAGGCACATATGAGATTATAGCTCCTGAAGAAATTG GCTTGGAAAGATCTAATGATGCCGGTATTGTCCTGGGGAAACTTAGTGGGCGCCACGCATTGAGAGATCGGTTGAATGAGCTTGGGTATCAGCTGGATGA CCAACAGCTTCACAATATCTTCTGGCGTTTTAAGTCAATAGCTGAACAGAAAAAGCGAGTTACTGATGCAGACATATTAGCTTTGGTGACTGATGAAGTT TTCCAGCCAGAGACTATTTGGAAGCTTCATGACTTGCAGGTCACATGTGGAACACTTGGTCTTTCCACTGCCACTGTCAAACTCAGTGATGCTAACGGAG AGGAGCATATTGCGTGCTCAATTGGAACAGGTCCAGTGGATTCTGCATACAAGGCAGTTGACCTCATAGTAAAGGAACGGGCAACATTGCTGGAGTACTC CATGACTGCTGTCGCAGAAGGTATCGATGCAATTGCAACGACTCGAGTCCTAATTCGGGGGGAGAACAAGTACACTCCAACACATGCTTTCACTGATGAA CCTTTTGAACGCACGTTTAGTGGTTCTGGGGCAGGGATGGACATAGTGGTGTCAAGCGTCAAGGCCTATATCAGCGCCTTAAACAAGATGTTATCATTTA AGTAG
AA sequence Show only first row Show all	>Lus10019574 pacid=23169901 polypeptide=Lus10019574 locus=Lus10019574.g ID=Lus10019574.BGIv1.0 annot-version=v1.0 MDSDLDLWYHKKFEKDGMLKHKGTYEIIAPEEIGLERSNDAGIVLGKLSGRHALRDRLNELGYQLDDQQLHNIFWRFKSIAEQKKRVTDADILALVTDEV FQPETIWKLHDLQVTCGTLGLSTATVKLSDANGEEHIACSIGTGPVDSAYKAVDLIVKERATLLEYSMTAVAEGIDAIATTRVLIRGENKYTPTHAFTDE PFERTFSGSGAGMDIVVSSVKAYISALNKMLSFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18500		MAML-4, IPMS1	ISOPROPYLMALATE SYNTHASE 1, me...		Lus10019574 [exp]	0	1
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10012946 [exp]	1.0	0.9872
AT1G17100			SOUL heme-binding family prote...		Lus10013045 [exp]	6.0	0.9595
AT5G59350			unknown protein		Lus10004955 [exp]	6.0	0.9697
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10003371 [exp]	6.5	0.9615
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	7.1	0.9575
AT3G05550			Hypoxia-responsive family prot...		Lus10029883 [exp]	8.1	0.9692
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004120 [exp]	9.4	0.9459
AT1G03475		LIN2, HEMF1, AT...	LESION INITIATION 2, Coproporp...		Lus10017221 [exp]	10.5	0.9421
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	10.6	0.9645
AT1G76600			unknown protein		Lus10033761 [exp]	11.0	0.9631

Compare expression of checked genes

Lus10019574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.