Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040005 [exp] 131 / 5e-39 AT5G35090 70 / 2e-15 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019575 pacid=23142556 polypeptide=Lus10019575 locus=Lus10019575.g ID=Lus10019575.BGIv1.0 annot-version=v1.0 ATGGGCTACAGCGACGGCGAGCCTAATTCGCCGGTACTGAAGCACCGCCTCATGTCCTCATGCCTCCTCACCCCGTTCCGCCGCAACAACCACCATCTCC CCCTCTCCTCGCAGGATCGCCACAACAACAACAACAACCACAACAACAAGCATCACCGTCATGCGTCCTTCGCACGCTCCTCTTCCCGCTCGTGGGGCGG AGGAGGAGCGGGATCTAAGTCGCCCGTCCACCAGAACGACAGCGATATGGCGGCGATGGGGAAGGAGAAGTGTATGCAATTCATCTCGCGGATGGGCTGT GCCGGCGGAGACGGCGGAGGGGGAGGAAGACACCGGCGACGACACTCTGTTGTTGGAGATTTCCACTACGACGCGCTAAGCTATTCCCTGAATTTCGACG ATGGGAACTTCGATTACGACGTCGACGGGGACTCCCCGTCTAGGAATTTCTCGTCACGATTGCCTCAGTCACCGCCGCCGGCTCCCCCAGGCCGCAGAAA CAGGGATATGCAGAGCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10019575 pacid=23142556 polypeptide=Lus10019575 locus=Lus10019575.g ID=Lus10019575.BGIv1.0 annot-version=v1.0 MGYSDGEPNSPVLKHRLMSSCLLTPFRRNNHHLPLSSQDRHNNNNNHNNKHHRHASFARSSSRSWGGGGAGSKSPVHQNDSDMAAMGKEKCMQFISRMGC AGGDGGGGGRHRRRHSVVGDFHYDALSYSLNFDDGNFDYDVDGDSPSRNFSSRLPQSPPPAPPGRRNRDMQSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35090			unknown protein		Lus10019575 [exp]	0	1
AT3G52105			unknown protein		Lus10011321 [exp]	7.2	0.8318
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	7.5	0.8487
AT3G09770		LOG2	LOSS OF GDU 2, RING/U-box supe...		Lus10015080 [exp]	12.5	0.8324
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10024875 [exp]	14.6	0.8373
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	17.6	0.8299
AT5G05250			unknown protein		Lus10030528 [exp]	17.9	0.7891
AT5G14130			Peroxidase superfamily protein...		Lus10012540 [exp]	20.8	0.7645
AT3G44610			Protein kinase superfamily pro...		Lus10043435 [exp]	24.5	0.8146
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Lus10019488 [exp]	25.6	0.8192
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	30.0	0.7818

Compare expression of checked genes

Lus10019575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.