Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46920 599 / 0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 462 / 4e-142 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 463 / 1e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) AT1G79570 465 / 3e-141 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G24715 457 / 8e-140 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 460 / 2e-139 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G57610 455 / 2e-139 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49470 202 / 9e-56 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 206 / 9e-55 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT5G03730 192 / 3e-50 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040006 [exp] 1579 / 0 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10038160 [exp] 453 / 1e-147 AT3G24715 527 / 2e-179 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10001315 [exp] 461 / 1e-146 AT5G57610 657 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031749 [exp] 460 / 1e-145 AT1G16270 703 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2) Lus10006977 [exp] 461 / 2e-141 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 461 / 3e-141 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10025941 [exp] 371 / 3e-108 AT3G24715 424 / 2e-129 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10016912 [exp] 195 / 2e-51 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 194 / 9e-51 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G190200 [exp] 1413 / 0 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G114300 [exp] 1412 / 0 AT3G46920 646 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.001G123500 [exp] 470 / 1e-142 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G170700 [exp] 462 / 1e-141 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G110000 [exp] 466 / 2e-140 AT2G35050 672 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.003G176100 [exp] 459 / 2e-140 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.001G052000 [exp] 453 / 2e-138 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.005G095200 [exp] 457 / 3e-138 AT1G79570 641 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.018G095800 [exp] 446 / 1e-135 AT5G57610 1075 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.007G069500 [exp] 447 / 6e-135 AT1G16270 994 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10019577 pacid=23142534 polypeptide=Lus10019577 locus=Lus10019577.g ID=Lus10019577.BGIv1.0 annot-version=v1.0 ATGGCTTTTGATCACAACTTAGTGTCAAAAGATCTGAGGCCGCTCAACGTCGCTACCCCGGTCACCTCCGACGATGTCCGCGTTGCGCCCGTGTCCGGAG GAACGAGCAATAATAGTACTGCCCCTAATTCCGCCACCGCTGCGGCGGTTATGAGCCCTACCGATTTTTACTCTGCCCCTGATGGGACTATTCCGGTTTT CTATCCGGATACCGGAGGCGGGTTTGTTGGTGTAGGGTATAGGAATGTGGCGCCGGCCGCGATTCCCCAATGGGTGCCGGTGGCACCTGGTAATGTGAAT ATTGGTATGGCAGCTCCTCAAGCTGTTGGTGGGTTTGGTTATAATCCCAATTTGGGGAATAGGGTAGTTGGTAATGCTGTTGATCAATCTAGTAGTGAAA TATTTGTTGGACTTAATTCCATTCCGCCGCTTAATGGCAATGGGAACACTGAATTGTTGAATGCGGGGTATGTTTATAGTCCCAGTTTAGGTAATAGGGG GAGTGGTAGTGGTGGCGGTAGGACTGATCACGCTAGTGAAGATGGCGGGGATGATTCCGTTTCTGGGAAGAAAGTTAAACTTTTGTGTAGTTTTGGAGGG AAGATTCTTCCTAGACCTGTTGATGGAGCATTGAGATACGTCGGAGGGCAGACAAGGATCATTAGCTTGAGAAGGGAAGTGAATTTCAGTGAGCTAATGC AGAAGATGGTCGATACTTATGGACAACCTGTTGTTTTGAAGTACCAGCTTCCTGAGGAGGATTTGGATGCATTGGTGTCAGTTTCATGTCCCGAAGATGC CGATAACATGTTGGATGAGTATGACAAGTTAGTGGAGAGATCTTCTGATGGTTCAGCTAAGTTAAGAGTCTTTTTGTTTTCAGCCACAGAGCTTGATGCT TCTGGTATGGTACATTTAGGAGATATGCAGGATAATGAACAGCGATATGTCGACGCTGTTAATGGGATTGCTGAGATTGGTGGGATCTCGAGGAAGGAAA GTATGGCGAGTGCGACTTCCACACAGAATTCTGATATTAGTGGTGCTGAAGCTGCTGACAACATCTCAGGCAGCGGACAAGGGGAAATGAGCAGACCTCC ATCAGGCGGCGGGCTTACCCCAAGATTGGTGCAAGTAGATCCTAACTCCCCACCACTTTATGCAGCAGATACGTCATCATCTGTTTCATTGGGTATTCCA CTTATCAACTCCGCTTCTCCTCCAGCTGTAATCTCCCCACATGAAGTCGACTTTGAAAGGTCTGCACCTGTTAATGTCTCTCAGCAGCACTTCGGTTACG AGTTACCACAAACCGGAATGCCCATTCAACCAACTGCACCTCATTTCCAGGCATATCGGGATCCTCGTCAGGATTATTTACATCCCCCTCCTCAATTGGG ATATCCAAACCCTCAAATGGGGGGGACTGCTGGTGGGTCACTGTTTGCTCAACAGCCAATGCATGATGTTAATGCTTCTATGGCTCCTCATCAGTATATT CCTACAGAGCACATGACTATGGCTCCTGTGAGACCTTTAATTGTGCAGCCATTGATGCAAGCTCAGCAAACTCGGGTGGACCATTATCCAGATGACAGGA CATATGGAACACGGTTAGTGCAGATCCCTGCTGATCCACCCCACAACATGTATCAGCCACAAGGTCAGCCTGCAATTATTGGGGGAGGATATAGTTGGAG GCAACCAGATCATGTTGCATATTCAGATGGAATGATTCGTCATCAACAGGCATCCTACCCTGAAAGAATTTCAAGACCAGAGGATTGTTTTATGTGCCAG AAAGCATTGCCTCATGCACATTCTGACCCAGTTGTACAGGATCAAAGTCCTAGGTCTTTAGAGTCTGTCTATCATAGTCTTCGTTCAGAAGATAGTGCAA AGCTGCAACCTGTGAACCGAATAATGGTGACTGGAGCAGCAGGAGAAAGCACCCTGGTTCAGGGTGATGGGGCTCGACATATAGTCACGGGTAATCTGGA ACAGACAATTGGGGCAGCTCAATCAGAAGCAATCGATTTGCCCCGGAGTGCTGAAGCAATTCACGAGTTGGAGAGTATTTCTCTCAGGAAAAAGGAAGCT CCTGAGCAACCTAAGATGCCAATTCCTGTTGGCATGCCAGGTCTACCTTGTGATGCGCAGACTAATTATGGACAGTTGATGGGTAAAACACCTCAGTCTC AGGTAGGAGATTCTATTCAGCAGCAGCAGGCAGCGACAACTATGTATCCAATTAACCAAAATGCACTATTAAAAATGCATGTTCGTGACGTGACTCATGT TGCTGGTGGTCCTATTCAAACTTCTGAAGGCATGATCTATGAGTCTCCAAAGGCACCTGCAGGTAACCTTCCTCTTGTTGTTCCAAAAGAAAATACGTTC AGCTCGTTTTTCTCCCGCGACCCGCTGAAACCAATTGAAGGCATGAAAGGTGCTTCTGAAATTAATTTATGTAATGAGCTCAACAAGCTGCCCAGTGATC CGAAAACCCAGCTAGTAGCTGTGAGGGAGCTATTTGATGATGCACTTAACAAACCTCAAGATTCGAATCTCATCAAATCTGAAGTTCAGCCTACTGCTGA ATTCTCATATCTACACAGCTCTCAGCCCATGGAACCATATAATGTTGCTCAACCATCATATCCGGGTGATCCAGGAGCACATCTGCATTCCATGGTTGGT ACCCTCTTGGATTCTGGTGATGTCAGTTGTGTCAATCAAAAGCATGTCGATGAGCCAGTATATCAAGTTGATAGACTCCCACCTGTTAGTGAGAGAAATG ATGACATCTCTAAGTTATTACCGGATACGCTTTCTGAGGATGTGGAGTCTTTGATACTGAGTGAGAATGCACCATCTTCAATATCGCCATCTAGTAGGGT TGAGGGTATTCAGGAATCGTCAGATTCTGTTTTCAGCAACCAGGACCCTTGGAACTTGAGGCACGGCGATACACATTATCCTCCTAAACCTCTCAAGATT GGGACGAGAAAAGATACTGTTGGTGCTGGTGATCCTTTCAGGGAAAATCATCCGGGTAATTCTGGAGAATCAATTCCAGACGTGCTGTTGGACGGTGGAA CTTCCCAAACCCTATGCAGTTCGGAGGATCCTCTGTCATCTAAAGGGTCCGAGGATAAGCTTATTAAACAAGAACTTCAGGCTGTTGCTGAGGGAGTAGC TGCATCTGTACTTAAATCGAGTATACCCGATGCTGACTTAACAGGTCATGAAAGAAATGAATCTCTTTCTAAAGTAATGGATTCCGAGGAAGTCCCAAAT AAAGATGTGGAGACACAGTATAAAGTAAAAGCAGAGGATCTGAAGAACAAGCAGCCAGAGAGAGTGAAGTTGGGATTTCCAATGTCAGAAGGTGCAGGAC GGCTACAGATCATTAAGAGCAGTGACCTTGAAGAGTTGCAAGAATTGGGATCTGGTACCTTTGGCACTGTGTATCATGGAAAGTGGAGGGGTACGGATGT TGCTATTAAGCGAATCAACGACAGGTGTTTTGTGGGGAAGCCTTCTGAGCAAGAACGCATGATAGATGATTTCTGGAATGAAGCTATCAAGCTAGCTGAC TTGCACCATCCAAATGTGGTTGCTTTTTATGGTGTCGTTCTTGATGGCCCAGGAGGTTCTGTTGCAACAGTGACAGAGTATATGGTAAATGGCTCTTTGC GGACTGCTTTGCTTAAGAATGAGAGGAGCCTTGACAAGCGGAAGCGCCTGTTGATTGCAATGGACGTGGCTTTTGGAATGGAATATTTACATGCGAAAAA CATTGTGCATTTTGACCTCAAGAGTGACAATCTGCTTGTCAATCTTAGAGATCCACACCGTCCGATATGCAAGGTTGGCGATCTGGGGCTGTCCAAGGTA AAATGTCAAACGCTCATCTCAGGTGGTGTGAGAGGAACGCTTCCATGGATGGCACCGGAGCTTTTGAATGGCAGCAGCAGCCTCGTCTCTGAAAAGGTTG ATGTTTTCTCATTTGGCATCGTGTTGTGGGAGCTCCTGACTGGGGAAGAGCCATATGCTGACTTGCACTACGGAGCGATTATAGGTGGTATTGTGAGCAA CACATTAAGGCCAGCAGTACCAGAGCATTGTGATCCGGAGTGGAAATCATTGATGGAAAGATGCTGGGCATCTGAACCATCCCAGAGACCAAGCTTCACT GCGGTTGCAAATGAGTTGCGAGCTGTGGCTGCCAAGATACAAACGCAGGCTCAAAAGTAG
AA sequence Show only first row Show all	>Lus10019577 pacid=23142534 polypeptide=Lus10019577 locus=Lus10019577.g ID=Lus10019577.BGIv1.0 annot-version=v1.0 MAFDHNLVSKDLRPLNVATPVTSDDVRVAPVSGGTSNNSTAPNSATAAAVMSPTDFYSAPDGTIPVFYPDTGGGFVGVGYRNVAPAAIPQWVPVAPGNVN IGMAAPQAVGGFGYNPNLGNRVVGNAVDQSSSEIFVGLNSIPPLNGNGNTELLNAGYVYSPSLGNRGSGSGGGRTDHASEDGGDDSVSGKKVKLLCSFGG KILPRPVDGALRYVGGQTRIISLRREVNFSELMQKMVDTYGQPVVLKYQLPEEDLDALVSVSCPEDADNMLDEYDKLVERSSDGSAKLRVFLFSATELDA SGMVHLGDMQDNEQRYVDAVNGIAEIGGISRKESMASATSTQNSDISGAEAADNISGSGQGEMSRPPSGGGLTPRLVQVDPNSPPLYAADTSSSVSLGIP LINSASPPAVISPHEVDFERSAPVNVSQQHFGYELPQTGMPIQPTAPHFQAYRDPRQDYLHPPPQLGYPNPQMGGTAGGSLFAQQPMHDVNASMAPHQYI PTEHMTMAPVRPLIVQPLMQAQQTRVDHYPDDRTYGTRLVQIPADPPHNMYQPQGQPAIIGGGYSWRQPDHVAYSDGMIRHQQASYPERISRPEDCFMCQ KALPHAHSDPVVQDQSPRSLESVYHSLRSEDSAKLQPVNRIMVTGAAGESTLVQGDGARHIVTGNLEQTIGAAQSEAIDLPRSAEAIHELESISLRKKEA PEQPKMPIPVGMPGLPCDAQTNYGQLMGKTPQSQVGDSIQQQQAATTMYPINQNALLKMHVRDVTHVAGGPIQTSEGMIYESPKAPAGNLPLVVPKENTF SSFFSRDPLKPIEGMKGASEINLCNELNKLPSDPKTQLVAVRELFDDALNKPQDSNLIKSEVQPTAEFSYLHSSQPMEPYNVAQPSYPGDPGAHLHSMVG TLLDSGDVSCVNQKHVDEPVYQVDRLPPVSERNDDISKLLPDTLSEDVESLILSENAPSSISPSSRVEGIQESSDSVFSNQDPWNLRHGDTHYPPKPLKI GTRKDTVGAGDPFRENHPGNSGESIPDVLLDGGTSQTLCSSEDPLSSKGSEDKLIKQELQAVAEGVAASVLKSSIPDADLTGHERNESLSKVMDSEEVPN KDVETQYKVKAEDLKNKQPERVKLGFPMSEGAGRLQIIKSSDLEELQELGSGTFGTVYHGKWRGTDVAIKRINDRCFVGKPSEQERMIDDFWNEAIKLAD LHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRTALLKNERSLDKRKRLLIAMDVAFGMEYLHAKNIVHFDLKSDNLLVNLRDPHRPICKVGDLGLSKV KCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVLWELLTGEEPYADLHYGAIIGGIVSNTLRPAVPEHCDPEWKSLMERCWASEPSQRPSFT AVANELRAVAAKIQTQAQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46920			Protein kinase superfamily pro...		Lus10019577 [exp]	0	1
AT3G46920			Protein kinase superfamily pro...		Lus10040006 [exp]	1.0	0.9351
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	1.4	0.8997
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Lus10033440 [exp]	3.2	0.8849
AT3G05040		HST1, HST	HASTY 1, HASTY, ARM repeat sup...		Lus10004145 [exp]	5.7	0.8981
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Lus10038094 [exp]	8.9	0.8507
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	9.5	0.8811
AT1G64530		NLP6	Plant regulator RWP-RK family ...		Lus10032423 [exp]	13.5	0.7674
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10018892 [exp]	15.2	0.8169
AT1G73930			unknown protein		Lus10032474 [exp]	18.2	0.8728
AT1G27595			unknown protein		Lus10028229 [exp]	18.3	0.8852

Compare expression of checked genes

Lus10019577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.