Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35100 306 / 5e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT4G34960 69 / 8e-14 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 70 / 1e-13 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT5G13120 69 / 2e-13 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT2G29960 67 / 5e-13 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT1G74070 67 / 1e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G55920 66 / 2e-12 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 63 / 8e-12 ROC7 rotamase CYP 7 (.1) AT3G44600 61 / 2e-10 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G15790 60 / 3e-10 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040007 [exp] 491 / 4e-178 AT5G35100 325 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10040008 [exp] 486 / 4e-176 AT5G35100 326 / 8e-113 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Lus10011330 [exp] 68 / 3e-13 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 68 / 7e-13 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10018238 [exp] 66 / 1e-12 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 66 / 1e-12 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 67 / 2e-12 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10020992 [exp] 66 / 3e-12 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10025052 [exp] 65 / 7e-12 AT4G34960 311 / 2e-107 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G189900 [exp] 407 / 1e-144 AT5G35100 326 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2) Potri.009G132800 [exp] 72 / 5e-15 AT4G34960 328 / 2e-115 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 70 / 6e-14 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.009G046500 [exp] 67 / 4e-13 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.002G185200 [exp] 68 / 5e-13 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.004G173500 [exp] 67 / 6e-13 AT4G34960 317 / 7e-111 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.010G189000 [exp] 67 / 6e-13 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G060200 [exp] 67 / 1e-12 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G251700 [exp] 65 / 2e-12 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.012G058700 [exp] 65 / 7e-12 AT1G74070 311 / 2e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10019578 pacid=23142550 polypeptide=Lus10019578 locus=Lus10019578.g ID=Lus10019578.BGIv1.0 annot-version=v1.0 ATGGCCTCCTTTCTCACACCTCCTTCACCACACTTCCTCACGCGCCGCTCCCTCCTCCTCTCCACCTCCCTCGCCCCACTCACTTCGCAACCCCTCCGCC TCCCTCCCCCTGACACCACCATAACTGACCGCATCTTCATGGACTTCTCCATCTGTGAGTCCTTATTCAGACCCGACCGCACCGTATCCGACACTGTTTC AACTCTCTGCACTGATCCAATACCACTCGGCCGCCTCGTCCTCGGCCTATACGGACACCTCGTCCCTTCCACTGTCTCCAATTTCAAATCCATGGTCACT TCCTCTGCCTACAAGAACACCCTCGTCCACAAGGTCCTCCCTGGCCAGTTCTTTGTTGCCGGTCGCCAAGGTAGAAAGGATTTGGGGGAGGTTAAGCCTC CCGGGAATTTGCCCAGGAATGTCGAGTCTGTAGATCCCAAGGCTTTTGTGTTGAGACATGACAAGGCTGGGGTGCTTTCTTTGTGTTTGGAGGAGAATGA TGATGAGGATGAGGTCAAGCTTGATCCTGACTATAGGAATGTTGAGTTCTTGATTACTACGGGTCCTGCTCCTTGTCCTCAACTCGATGATAAGAACATT GTGTTTGGAGCTGTTCTTCAAGGAATGGATGTTGTGACGGCAATAGCTGCTATCCCAACGTACAAACCCTCGGAGAGGATCCGGCAGTTCAACGATCTGG CAGAGTTCTTCGGGGACGAAAGAGCGCAGAATGCACGTACAATCTGGGATAAGCCGCTTAAAACTGTATATATCAGTGACTGTGGAGAGCTCCGAGTAGC AAAGCCTTCTCTTACCCCTTCATTACCCTAG
AA sequence Show only first row Show all	>Lus10019578 pacid=23142550 polypeptide=Lus10019578 locus=Lus10019578.g ID=Lus10019578.BGIv1.0 annot-version=v1.0 MASFLTPPSPHFLTRRSLLLSTSLAPLTSQPLRLPPPDTTITDRIFMDFSICESLFRPDRTVSDTVSTLCTDPIPLGRLVLGLYGHLVPSTVSNFKSMVT SSAYKNTLVHKVLPGQFFVAGRQGRKDLGEVKPPGNLPRNVESVDPKAFVLRHDKAGVLSLCLEENDDEDEVKLDPDYRNVEFLITTGPAPCPQLDDKNI VFGAVLQGMDVVTAIAAIPTYKPSERIRQFNDLAEFFGDERAQNARTIWDKPLKTVYISDCGELRVAKPSLTPSLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10019578 [exp]	0	1
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040008 [exp]	1.4	0.9166
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10038385 [exp]	4.2	0.8866
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	4.9	0.8497
AT2G38780			unknown protein		Lus10019776 [exp]	5.5	0.8853
AT4G29670		ACHT2	atypical CYS HIS rich thiored...		Lus10007994 [exp]	5.9	0.8781
AT1G44920			unknown protein		Lus10018656 [exp]	7.2	0.8384
AT5G35100			Cyclophilin-like peptidyl-prol...		Lus10040007 [exp]	7.3	0.8762
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10027532 [exp]	8.2	0.8852
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10022429 [exp]	10.1	0.8306
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	12.5	0.8203

Compare expression of checked genes

Lus10019578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.