Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46490 61 / 5e-13 unknown protein AT5G35110 50 / 9e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040009 [exp] 160 / 7e-52 AT2G46490 74 / 7e-18 unknown protein Lus10000078 [exp] 44 / 1e-06 AT5G35110 49 / 1e-08 unknown protein Lus10006299 [exp] 44 / 1e-06 AT5G35110 49 / 1e-08 unknown protein Lus10006300 [exp] 44 / 1e-06 AT5G35110 49 / 1e-08 unknown protein Lus10000088 [exp] 44 / 3e-06 AT2G46490 49 / 2e-08 unknown protein Lus10006298 [exp] 44 / 3e-06 AT2G46490 49 / 2e-08 unknown protein Lus10003182 [exp] 41 / 1e-05 AT2G46490 49 / 7e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113700 [exp] 55 / 1e-10 AT5G35110 78 / 1e-19 unknown protein Potri.006G189600 [exp] 52 / 1e-09 AT5G35110 71 / 9e-17 unknown protein Potri.018G113901 [exp] 45 / 2e-06 AT5G35110 58 / 1e-10 unknown protein Potri.006G189700 [exp] 39 / 0.0002 AT5G35110 50 / 5e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019579 pacid=23142579 polypeptide=Lus10019579 locus=Lus10019579.g ID=Lus10019579.BGIv1.0 annot-version=v1.0 ATGCCTGGTGGATCCGCGGCCGCCGACGGATTCTTCCGCAACTGGGCGTTTGATAGCGCGTTATCGGGGATTGACCACGGGATCGAGCACCGCCCTTACC ACCGCAACTGTAAATGTGCTCTCCACGACAAGTCCCGTCGCGATGGCGGCAACAACTTCGGCAGATCTTGCGGCGGAAACTGCAGGAACAACGCCGTCTC GTACAAGATCCGGCGATCGTGGAGCGAAGGATCCCTGGCGTTGTCCGCGGCGGCCAACGGATCTGGATCAGGAGTGGGATCGTCTCCTTCGTGTTCAACT AACTCTTCCCCTAACCCGGCGGCGGCTCTCGCTCGGAGTATGAGCCGGGATGAACTCTCGTCAGCGGGAAACGATTGA
AA sequence Show only first row Show all	>Lus10019579 pacid=23142579 polypeptide=Lus10019579 locus=Lus10019579.g ID=Lus10019579.BGIv1.0 annot-version=v1.0 MPGGSAAADGFFRNWAFDSALSGIDHGIEHRPYHRNCKCALHDKSRRDGGNNFGRSCGGNCRNNAVSYKIRRSWSEGSLALSAAANGSGSGVGSSPSCST NSSPNPAAALARSMSRDELSSAGND

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46490			unknown protein		Lus10019579 [exp]	0	1
					Lus10017454 [exp]	4.5	0.7799
AT3G52710			unknown protein		Lus10022708 [exp]	8.9	0.7569
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000097 [exp]	12.7	0.7598
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10018791 [exp]	13.7	0.7401
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10032417 [exp]	20.8	0.7314
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Lus10010704 [exp]	21.5	0.7736
AT1G53540			HSP20-like chaperones superfam...		Lus10040830 [exp]	22.0	0.7538
AT3G05500			Rubber elongation factor prote...		Lus10029892 [exp]	24.9	0.7321
AT1G76920			F-box family protein (.1)		Lus10018896 [exp]	33.0	0.7530
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	33.0	0.7285

Compare expression of checked genes

Lus10019579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.