Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012669 [exp] 192 / 1e-62 ND / Lus10009191 [exp] 179 / 7e-58 ND / Lus10017761 [exp] 158 / 1e-50 ND / Lus10010734 [exp] 140 / 3e-41 AT1G69980 159 / 1e-47 unknown protein Lus10036279 [exp] 135 / 8e-41 ND / Lus10029192 [exp] 132 / 7e-40 ND / Lus10023812 [exp] 131 / 2e-38 ND / Lus10027140 [exp] 124 / 3e-37 ND / Lus10023588 [exp] 124 / 8e-37 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019580 pacid=23142555 polypeptide=Lus10019580 locus=Lus10019580.g ID=Lus10019580.BGIv1.0 annot-version=v1.0 ATGACGCTGAAGTTAGAGAAATACTTCAATTGTCATTGCTATAAGTGTAGCTTCGAGAAGAAGTTGGAGGTGGTGTTGGCTGAGAACTCGGTGAGGTGCG AGATGCAAGCTACAATGGAGGTGAAGCTTGTTGAGAAGGATGATGAGATTGAAGCTATTCGTACTGAGCTGGCACATGATCGTTCCGAATGGCAATGTGA GAGGATAGGCATCATAAGGTCAAAGGATAGGTACATCGAGGCTCTCACTAAACACTTGAAGGATGCAAATACGAAGGTTAAAAGGTTTAGGGTGGTCTAT ACAGCCCGTGGTCAAAAGCCGCCACTGTTGCCTAAGCTGCAACCTCGTGGTCAGAAGCTGCTGCTAGCTATGAATGTGATGGGGAATCCTGCAGATGATT GGAGGGAATATGTTGTGGCATATGCTGGTGGAGGGAATATGTTGTGGCATATCCTGCAGTAA
AA sequence Show only first row Show all	>Lus10019580 pacid=23142555 polypeptide=Lus10019580 locus=Lus10019580.g ID=Lus10019580.BGIv1.0 annot-version=v1.0 MTLKLEKYFNCHCYKCSFEKKLEVVLAENSVRCEMQATMEVKLVEKDDEIEAIRTELAHDRSEWQCERIGIIRSKDRYIEALTKHLKDANTKVKRFRVVY TARGQKPPLLPKLQPRGQKLLLAMNVMGNPADDWREYVVAYAGGGNMLWHILQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019580 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Lus10014362 [exp]	1.0	0.8172
					Lus10023004 [exp]	5.3	0.7479
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Lus10019064 [exp]	5.7	0.8039
AT5G05220			unknown protein		Lus10034248 [exp]	7.2	0.8129
AT1G70890		MLP43	MLP-like protein 43 (.1)		Lus10012467 [exp]	10.8	0.8107
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	11.8	0.7955
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	14.1	0.7797
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	15.6	0.7373
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	16.7	0.6601
AT5G52975			Protein of unknown function (D...		Lus10032886 [exp]	17.3	0.7334

Compare expression of checked genes

Lus10019580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.