Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09850 370 / 9e-117 D111/G-patch domain-containing protein (.1) AT1G17070 64 / 2e-10 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) AT2G42330 57 / 4e-08 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1.2) AT2G24830 55 / 2e-07 C3HZnF zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) AT3G54230 48 / 2e-05 SUA suppressor of abi3-5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036327 [exp] 775 / 0 AT3G09850 468 / 8e-154 D111/G-patch domain-containing protein (.1) Lus10019073 [exp] 181 / 2e-48 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10002252 [exp] 69 / 7e-12 AT1G17070 622 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10000930 [exp] 66 / 7e-11 AT1G17070 895 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Lus10020095 [exp] 56 / 1e-07 AT2G24830 471 / 8e-163 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Lus10026901 [exp] 55 / 2e-07 AT2G24830 471 / 1e-162 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113600 [exp] 507 / 2e-170 AT3G09850 524 / 3e-176 D111/G-patch domain-containing protein (.1) Potri.006G189501 [exp] 452 / 3e-149 AT3G09850 436 / 1e-142 D111/G-patch domain-containing protein (.1) Potri.019G043200 [exp] 71 / 2e-12 AT1G17070 794 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.013G076000 [exp] 66 / 8e-11 AT1G17070 853 / 0.0 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (.1) Potri.018G016200 [exp] 56 / 9e-08 AT2G24830 421 / 1e-143 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein (.1) Potri.004G081800 [exp] 44 / 0.0003 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [flax] [poplar] G-PATCH PF01585 [flax] [poplar] G-patch G-patch domain CL0449 [flax] [poplar] PF01424 [flax] [poplar] R3H R3H domain
Representative CDS sequence Show only first row Show all	>Lus10019584 pacid=23142578 polypeptide=Lus10019584 locus=Lus10019584.g ID=Lus10019584.BGIv1.0 annot-version=v1.0 ATGGGCGGACGTGGCCGGCGAAGACCGAACAATAGCAGCAGCAGAAGATGCGATACGAGTAGCAATATTCGAAGCGGAAGGAAGAGATCGAGTTCTTCTT CTCGACGCAGGGACTCTCTCTTTGTCGATGGCGGCTTCTTAGCCGATTGGCAAGGAAGGAACCCTGGATCAAGTTTGAGGTCCGGTCCGAGATCGGGAAA CCATAGGGGAACTAAAGAACTCTCGACCTCTATACCGAACAATGCAATCCCCAGTTCTGCTGGAAATTCTTTTGGTTGTGGGTACCCTACCGTTGAGAAA CAACAGGAGGGTTTTCCGTTGGACCTTTCAAGAGAGGGACTCAATGCAGGGGATACTTTTGATGCAACACATCCTATTGTATTGTTCAATTCCAACAAGA CCGAGATTGTTGCTTATTTAGATGAAACACCTCCACCAAAGCCTCTAACGGAGGATTTCACTTATGATTATGGTTCTCGTTTTATGATTACTGATGGTTT TCATAGAGGCCTGGGTTTCAATAATGAGTTGGCGGCAACTCCAGGTGGTATTGGATCATCATCTAATCAAGCAGAACGGGAAGAACAAGAAAGAACAGCT TTTGATCCATCACACTTTGACAAAAGAATGGATGTTGATCCTCTTGAATTTGAGATTGGTCAGGCGACAGGAGAAGATCAGACTGAGTCAAAAGTGAAGG TGAAAAATCCTGCATTTTTGTTGGTTGGAGGAATGAAATTGTATACCCAAGATATCTCTGATGAGGAAGGTCAGGAGGTGGATGATTTCAAGTCAGTAGA TAATGAAAGTTTTCAATCTGGACAAGAACAAGCAGAATTATCTGAAAGTGATTACTCGGAGGACACTTTTGACAGTGACCTGGAAATTGATGATGAGGTT GCCAAGGATTACCTAGAAGGAATTGGTGGCAGTGACAGTGTCTTTAATGCCAAATGGTTGATGGACAATTATTTTGATGATTCAGATGAAAATACCTCTT CTTGTAGTGGTGACTTTGATGATACTCTCGAAACATTAGGTGGGGTTTCCCTCCAAGAAGGATATGGTATGATGACACCACCATCAAGAAAGAATCGGGT TACCCAACTGGCAAAATCCTGGCCAGCAGCTCCAAAGATTAAACGTCACAGACACTACCCAGGTGAAAAGCAGAAGTTCCGTACAGAAATGAATGCTGAG AAACACCGTGACAGAACGCTAAGGCGAGGGGTTGACTTGGAGAATATAAATACGAAACTAGAGGACATAGTTCTGAATGAAGTGGATATATTTGCCTTCC CACCTATGCATTCTAAGGATTGTTCACAGGTAACACGGTTAGCAGCAATGTATGGTTTGCGTAGTGGATCTCACGGTTCAGGGAAGAAAAGATTTATCAC AGTCATGCGAACTCCACATACATCCATGCCCTTGGTGAATGATAGAGTCCGCCTGGAACAGCTGATTGCCAGCAATGAAGGGGAAGATTTCAACACTCCT GAAAGGAAATCAACGAGTGTAGACAGAAGAAGAAGAAGAAGAAGGAACTCCTATTCAAAGGACAATGGTCCGAGCAAAGTGGAACATTATGGCCGAACGA AGTCATCCAGAAATGCCACCAATCGACATGGCAATAGCATCTCAATGAAACAGGGTGAGAGAAAGGCTGAAGCTTATGCCAGCCAACCTGTATCATTTGT CGCAAGTGGCGTAATACAATCTGACGTTGACGCAAACAACACAACCACGGATCTCATGGATACGAATGAAACCGTTGACGAGAAGGTTGCTGTCACGGGA TCATCAAAGGTTGGTGCATTTGAACTGCACACCAAAGGGTTTGGATCCAAAATGATGGCGAAAATGGGATATATAGAAGGAGCTGGTCTAGGGAAGGATG GCCAAGGTATGGCTGCACCGATTGAAGCAATTCAACGTCCGAAATCTCTAGGACTGGGTGTTCAATTTTCCAACACTGATGTCGACCCCCCCAAACCCCA ACAGCAAAGTGCGAAAAGATCACACGAAAAGCGTACCAAGCAGCAACAGCAGAGCTTTGGGGGTTTTGAGAAGCATACCAAAGGCTTTGGATCGAAGATG ATGGCTAGGATGGGATTTATTGAAGGCAGTGGCTTGGGTAAAGATTCTCAAGGTATGGTGAACCCTTTGGCTGCCATTAAGCGCCCGAAAGCTCGAGGGC TCGGTGCCACAGGTTAG
AA sequence Show only first row Show all	>Lus10019584 pacid=23142578 polypeptide=Lus10019584 locus=Lus10019584.g ID=Lus10019584.BGIv1.0 annot-version=v1.0 MGGRGRRRPNNSSSRRCDTSSNIRSGRKRSSSSSRRRDSLFVDGGFLADWQGRNPGSSLRSGPRSGNHRGTKELSTSIPNNAIPSSAGNSFGCGYPTVEK QQEGFPLDLSREGLNAGDTFDATHPIVLFNSNKTEIVAYLDETPPPKPLTEDFTYDYGSRFMITDGFHRGLGFNNELAATPGGIGSSSNQAEREEQERTA FDPSHFDKRMDVDPLEFEIGQATGEDQTESKVKVKNPAFLLVGGMKLYTQDISDEEGQEVDDFKSVDNESFQSGQEQAELSESDYSEDTFDSDLEIDDEV AKDYLEGIGGSDSVFNAKWLMDNYFDDSDENTSSCSGDFDDTLETLGGVSLQEGYGMMTPPSRKNRVTQLAKSWPAAPKIKRHRHYPGEKQKFRTEMNAE KHRDRTLRRGVDLENINTKLEDIVLNEVDIFAFPPMHSKDCSQVTRLAAMYGLRSGSHGSGKKRFITVMRTPHTSMPLVNDRVRLEQLIASNEGEDFNTP ERKSTSVDRRRRRRRNSYSKDNGPSKVEHYGRTKSSRNATNRHGNSISMKQGERKAEAYASQPVSFVASGVIQSDVDANNTTTDLMDTNETVDEKVAVTG SSKVGAFELHTKGFGSKMMAKMGYIEGAGLGKDGQGMAAPIEAIQRPKSLGLGVQFSNTDVDPPKPQQQSAKRSHEKRTKQQQQSFGGFEKHTKGFGSKM MARMGFIEGSGLGKDSQGMVNPLAAIKRPKARGLGATG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	0	1
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	1.0	0.9263
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10022930 [exp]	1.4	0.8941
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Lus10003496 [exp]	2.8	0.8744
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	3.0	0.8783
					Lus10031226 [exp]	4.9	0.8435
					Lus10036475 [exp]	5.5	0.8320
AT1G72320		APUM23	pumilio 23 (.1.2.3)		Lus10022388 [exp]	6.0	0.8517
AT1G07990			SIT4 phosphatase-associated fa...		Lus10037400 [exp]	7.0	0.8556
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10027084 [exp]	7.4	0.8459
AT2G32760			unknown protein		Lus10022576 [exp]	9.3	0.8092

Compare expression of checked genes

Lus10019584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.