Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35180 703 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT1G06050 154 / 1e-41 Protein of unknown function (DUF1336) (.1) AT2G28320 152 / 2e-38 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT5G10750 141 / 4e-37 Protein of unknown function (DUF1336) (.1) AT3G54800 146 / 2e-36 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT4G19040 145 / 5e-36 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 142 / 4e-35 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT5G24990 121 / 3e-30 Protein of unknown function (DUF1336) (.1) AT5G25010 120 / 4e-30 Protein of unknown function (DUF1336) (.1) AT5G25020 85 / 5e-18 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040011 [exp] 1184 / 0 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040015 [exp] 727 / 0 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019591 [exp] 635 / 0 AT5G35180 931 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 394 / 3e-129 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10008154 [exp] 149 / 5e-40 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1) Lus10016094 [exp] 155 / 3e-39 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10012149 [exp] 155 / 4e-39 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 154 / 5e-39 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10007596 [exp] 153 / 1e-38 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113100 [exp] 493 / 1e-164 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.010G223400 [exp] 160 / 7e-41 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.008G038800 [exp] 158 / 2e-40 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 149 / 7e-40 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 149 / 8e-40 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.001G132900 [exp] 153 / 9e-39 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.009G011200 [exp] 152 / 2e-38 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.003G100600 [exp] 152 / 3e-38 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.018G014234 [exp] 140 / 9e-37 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1) Potri.008G213000 [exp] 145 / 4e-36 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10019585 pacid=23142575 polypeptide=Lus10019585 locus=Lus10019585.g ID=Lus10019585.BGIv1.0 annot-version=v1.0 ATGTCAGGGGAAGGGTGGGAACTTGATGGGTATGATAGCTGTGGTAGTGGTGGCCGGAGAAGCAGATCCAGTTCTAGCAGCGGCGGGGGAGGCGGCGGCG GCGGTGGCGGTGGAGATGGTGAAGAGAAAGACAGAGCGGTTGATGAGTATTTTGGGTGGGTTTACCATTTGGGGGCTAGTTCAATTGGGTATGTGTATTG CTACTTGAGGTTTCTGTTCCTAAGGGGAAAGATTGTGGAGATGTACAAGCGGGATCCTCATCAGCATCCTGGAATTCGACCCATCAGAAGAGGTATAGTT GGGCCAACATTTATGGTGGAGGACTTGGGTTGCAGAAGGGTTCACCGTGGGGACGTTTATGTTTTACGGTTTTACAACAGATTGGACGAGGAGAAAAAGG GAGAATTTGCGTGTGCTTCCGCTGAAGAAGCTCGAAAATGGGTGGAGGCATTTGATCGTGCAAAGCTACAGAATCCTTCATTTTCAAGGATTAATTTAGG AGTACATCGGAATGGAGTAAGACGATATGCAACTGGATTGAAACGGCTTATTAGTGTGGGTAAAGGACCTGAAAAGCTATTGCAGCAAGTCGCAAGTCTT GACCCAAAGGTCAGGACAGATGCAGATTTTGAAGATGAAAGTGGCGATGCAGTTGAAACACATGAATGGAAATGTGTCCGCACCATAAATGGTGTTCGCA TCTTAGAGGATGTCTCTGACTGCAAGGTCAAGAGTGTCAAAGGTGTTCTAGTTAAAGCAGTTGGTGTTATTGATGCAAGTGCTGATACCGTTTTTGAGGT GTTTTGTAACCTTGATCGACATCAAAGATACGAATGGGATACGTTGACAGGTGATTTGGAGCTGTTGGATACTTATGATGGAAACTATGATGTAGTATAT GGCACATTTAATCCGAAAAACCTGTCTCGGTGGAGATCCAACAGAGATTTTGTCTACTCGAGGCAATGGTTTTATGAGGATGGAACCTACACAATCTTGC AGTTTCCAGCTGTACACAAGATGCGGCCCCTAAGATCTGGTTTTCGGAGGAAGAAAATCAACTCTTCAACTTGGGAGATCAGGCGGTTAAACACACCGAT GGGTTCTACCACTTCAAAATGCATCGTCACAGAAATGTTAGAGATACATCAAGCAGGATGGAATAGATGGAAGCAAAACCTAAGTTCAAAGTTTGAAAGG ACTATACCATATGCTTTGCTGTCTCAAGTTGCCGGTCTAAAAGAATATATTGGAGCCAATCCGGCGCTTTGTCCAGTTCTGCGGTCAAGTATATCTTATG TTTCCGACACTTCTAGTGATCAGGATATTGAGGAAGCGGAGGATGAATTTTTTGATGCAAACAATGGTGAATCTTCATCATCAGGAGAAGAGAGTGATAA TGACAGCAAACCAGTGAATAAGGTAGCTAGAGTGAAACTGAAGAATGTTTTCTGGGCAGTCAGATTCACTAACATGGCTAAGAAGAAAACTTCAGGTGCT TACTTGCTTTCCAAGCGTATTCTTTATTACAGATTCTATATCATAGTGATGGGAGGAGATCCTCTATTCAAGCTCATTGCAGCTGATTGGTTCAGAAGTG AGCAACCAGTAGACTGTTTTGGACTGCACCCCAAGTGTCTATTACAGAGTGACGCAGGGAAAAAGCTTCCGTTTGTCTTTGTCTTTAACCTCCAGATTCC AGCAAAACCATGCCACAGCCTGATTCTTTACTTCGCAGCAGATAGGCCGTTAAAAGCAGGTTCTCTGATGGATAAATTTGCAAACGGGACTGATGCATTT CGAAAATCCAGATTCAAATTAATCCCCAGTATTGAGGGTTATTGGCTTGTCAAAAGAGCTGTTGGAAACAAAGCTTGCATACTATCCAAGAATGTAAATT GCAAATACCTGAGACAAGACAACTTCTTGGAGATGGATGCAGATATTGGGTCATCTGCCATTGCGAAGAAAGTGATTGGTATTAGCTTCGGTTGTACAAG CTTCATCGCTGATCTTGCGATCATGATAGAGGGACAAGATGAGACAGAGTTACCGGAGTGTCTGCTTGGCACTGTTCGCTTACACCATCTTGGGCCTGAG CATTCAGTGCCTCCAGGGACTTGA
AA sequence Show only first row Show all	>Lus10019585 pacid=23142575 polypeptide=Lus10019585 locus=Lus10019585.g ID=Lus10019585.BGIv1.0 annot-version=v1.0 MSGEGWELDGYDSCGSGGRRSRSSSSSGGGGGGGGGGGDGEEKDRAVDEYFGWVYHLGASSIGYVYCYLRFLFLRGKIVEMYKRDPHQHPGIRPIRRGIV GPTFMVEDLGCRRVHRGDVYVLRFYNRLDEEKKGEFACASAEEARKWVEAFDRAKLQNPSFSRINLGVHRNGVRRYATGLKRLISVGKGPEKLLQQVASL DPKVRTDADFEDESGDAVETHEWKCVRTINGVRILEDVSDCKVKSVKGVLVKAVGVIDASADTVFEVFCNLDRHQRYEWDTLTGDLELLDTYDGNYDVVY GTFNPKNLSRWRSNRDFVYSRQWFYEDGTYTILQFPAVHKMRPLRSGFRRKKINSSTWEIRRLNTPMGSTTSKCIVTEMLEIHQAGWNRWKQNLSSKFER TIPYALLSQVAGLKEYIGANPALCPVLRSSISYVSDTSSDQDIEEAEDEFFDANNGESSSSGEESDNDSKPVNKVARVKLKNVFWAVRFTNMAKKKTSGA YLLSKRILYYRFYIIVMGGDPLFKLIAADWFRSEQPVDCFGLHPKCLLQSDAGKKLPFVFVFNLQIPAKPCHSLILYFAADRPLKAGSLMDKFANGTDAF RKSRFKLIPSIEGYWLVKRAVGNKACILSKNVNCKYLRQDNFLEMDADIGSSAIAKKVIGISFGCTSFIADLAIMIEGQDETELPECLLGTVRLHHLGPE HSVPPGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	0	1
AT1G27340			Galactose oxidase/kelch repeat...		Lus10011354 [exp]	5.7	0.8945
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004125 [exp]	5.9	0.8958
AT4G30900			DNAse I-like superfamily prote...		Lus10036262 [exp]	8.7	0.8584
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10010851 [exp]	10.5	0.8754
AT3G22550			Protein of unknown function (D...		Lus10035894 [exp]	10.9	0.8260
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	12.0	0.8633
AT5G41470			Nuclear transport factor 2 (NT...		Lus10024664 [exp]	13.0	0.8728
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	13.3	0.8694
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	13.5	0.8444
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	15.5	0.8811

Compare expression of checked genes

Lus10019585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.