Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025361 [exp] 231 / 2e-75 AT2G14740 454 / 2e-155 VACUOLAR SORTING RECEPTOR 3, VACUOLAR SORTING RECEPTOR 2;2, binding protein of 80 kDa 2;2, vaculolar sorting receptor 3 (.1.2) Lus10005846 [exp] 221 / 3e-75 ND / Lus10039516 [exp] 211 / 9e-72 ND / Lus10022968 [exp] 226 / 2e-70 AT1G10790 214 / 8e-63 unknown protein Lus10039394 [exp] 208 / 5e-69 ND / Lus10005851 [exp] 201 / 1e-66 ND / Lus10004817 [exp] 192 / 7e-64 ND / Lus10014855 [exp] 191 / 2e-63 ND / Lus10014656 [exp] 201 / 9e-63 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019586 pacid=23142577 polypeptide=Lus10019586 locus=Lus10019586.g ID=Lus10019586.BGIv1.0 annot-version=v1.0 ATGGAGTGCGATGGGGTCGAGCTGAAACCTTGCCACCTCCACCACTTTTGGCGATCTTTGGAATACCGTCTTCCCGTAGACAGTGAGAAGTGGGAAGACC ACGACTCTACAGATCGCGCCATCCTCAGCGGAATGGTTCAGACCATTTGTGATAGAGGTGGCCCCGCTGTACGGGCCTTGACTTCACTGGTTCGGTCCCA GTATCAGCCAGAATCAGACGGAGTGAAGCAGCCGAAGAAGTCGGACGCGCCAAAAGGGAGGCCTCGTGCGCGAAAGACCGATGGGCGGCACCTTTCGTAC CACGAGCATGCGAGTGCCCATTGCACCCCACCTAAGGGCAAGACCAAATCAGGTACCGGAACTACGCAACCGGCTAATCCAACCACAAGCAAGTCTAAAA CTTCAATTCCTAACAGAGGTGTGTAG
AA sequence Show only first row Show all	>Lus10019586 pacid=23142577 polypeptide=Lus10019586 locus=Lus10019586.g ID=Lus10019586.BGIv1.0 annot-version=v1.0 MECDGVELKPCHLHHFWRSLEYRLPVDSEKWEDHDSTDRAILSGMVQTICDRGGPAVRALTSLVRSQYQPESDGVKQPKKSDAPKGRPRARKTDGRHLSY HEHASAHCTPPKGKTKSGTGTTQPANPTTSKSKTSIPNRGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10019586 [exp]	0	1
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10022654 [exp]	4.0	0.6588
AT5G46230			Protein of unknown function, D...		Lus10033612 [exp]	9.9	0.6999
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	11.5	0.6389
					Lus10013743 [exp]	11.9	0.6579
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	13.0	0.6294
					Lus10004306 [exp]	31.9	0.5977
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10035456 [exp]	34.5	0.6310
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10009517 [exp]	34.6	0.6376
AT5G60010			ferric reductase-like transmem...		Lus10019390 [exp]	38.1	0.6306
AT5G12970			Calcium-dependent lipid-bindin...		Lus10033343 [exp]	40.0	0.5002

Compare expression of checked genes

Lus10019586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.