Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20320 525 / 8e-171 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 209 / 6e-58 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 200 / 7e-55 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT3G03300 190 / 2e-51 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT4G15417 119 / 4e-30 ATRTL1 RNAse II-like 1 (.1) AT3G20420 111 / 1e-26 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 110 / 5e-25 RTL3 RNAse THREE-like protein 3 (.1) AT1G80650 67 / 1e-12 RTL1 RNAse THREE-like protein 1 (.1) AT4G00420 59 / 5e-10 Double-stranded RNA-binding domain (DsRBD)-containing protein (.1), Double-stranded RNA-binding domain (DsRBD)-containing protein (.2), Double-stranded RNA-binding domain (DsRBD)-containing protein (.3) AT4G37510 45 / 0.0001 Ribonuclease III family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040013 [exp] 388 / 1e-131 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2) Lus10016367 [exp] 216 / 3e-60 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10030177 [exp] 207 / 8e-59 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019757 [exp] 185 / 9e-50 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10005141 [exp] 171 / 4e-48 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10036447 [exp] 175 / 2e-46 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10000182 [exp] 119 / 4e-30 AT4G15417 230 / 5e-75 RNAse II-like 1 (.1) Lus10015141 [exp] 87 / 2e-19 AT4G15417 197 / 2e-63 RNAse II-like 1 (.1) Lus10005142 [exp] 50 / 7e-06 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188800 [exp] 584 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 212 / 4e-59 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 202 / 2e-55 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.010G181400 [exp] 185 / 8e-50 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 181 / 2e-48 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.002G226700 [exp] 130 / 5e-34 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 120 / 5e-30 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.003G179700 [exp] 76 / 9e-16 AT1G80650 86 / 4e-21 RNAse THREE-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF00035 [flax] [poplar] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Lus10019587 pacid=23142545 polypeptide=Lus10019587 locus=Lus10019587.g ID=Lus10019587.BGIv1.0 annot-version=v1.0 ATGTCTAAATTGGTGGGTTCTGTCATTTTCGCTCAGGCATATATACGTGATCAGCCATTTGATCCATGCCAATTTTTTGCTTTGGGGCGTCCGTGCTCCG TTATTTGTACCAAGGAATCAGAAGGATCGATTCATGAACTAACTGGTAGATCCTCACGAGATCATCCTAACAGTGAAGTTAGATGCAATAAAGGTCATCA CTGGCTACAAAAGAAGACAATTGCTGATTTGGTTGAAGCTCTTGTTGGAGGATTTATAGTAGACAGCGGGTTCAAAGGTGCAACTGCTTTCCTTAAATGG ATTGGCATCAAAGTAGGATTTGACCCATCCCAAGTTTCTAAGATTTGTGCAGCAAGCTGTCGCTACATGCCACTTTCTACTTCACTGGAAATTGCTGCTC TCGAGAATTCACTAGGATATTCGTTTCATCATAAAGGTCTGCTTCTGCAGGCATTTCTACATCCTTCTTACAACAAGCACGGAGGAGGTTGCTATCAAAG ACTGGAGTTTCTTGGAGATGCTGTCATGGATTACCTTATCACATCATATCTGTTCTCAGTTTATCCGAGGATGAAGCCTGGTCACCTGACAGATCTTAGA TCAGCATTGGTTAATAATAGGGCTTTCGCCAAAGTTGCAGTTGTTCGATCTTTCCACAAGTTTCTTATAAGTGAATCTAGCGCCCTCTCTGAGGCCATTA AAGCTTATGTGGGCTTTGTTGAAGCACCTCCGAGAGAAGGTGGTCTCTCTGAAGGGCCAAGATGTCCAAAGGCACTTGGTGATTTGGTTGAATCTTGTAT GGGAGCAATTTTCCTTGACACGGGGTTCAATCTGAACCATGTCTGGAAACTAGTGCTGTCGTTTCTGGACCCAATCATGAAATGCCCCAACCTGCAGGTG AACTATGTTAGGGAGTTGCGGGAGCTATGCCAGTCATACAACTGGGTTTTGGAGTTTGAAGAATCAAAGAAAGGAAGAGTCTTTACAGTTGAAGTAAGAG TTGGAAATAAAGATTTGTCTCTATCAGCATCGGCATCCTACTCAAGCAAGAAAGAAGCGACTAAGATTGCTTCACAGAAAGTATATGCGGAGTTAAAGGC TCATGGCTATGCACAAAAGTCCAGCTCGCTGGAGAAAGTTCTCAAGGATAGTACGAAGGAAGAGGCCAAGTTGATAGGATATGACGAAACTCCCATAGAT ATTTCAACTGCGGGCGTATGTGAACCTGCTGAGCGTGTTTATGATCCCCAAAATTATTCAATCAAACGAGTTGGTGATGGTAAGCCAGCACGCTTAAATT CTGGCGGTGCAGAGACCCAGCAGCATCCACTAGCATTACAAGCATCAGGTGTATCACATCTAAGATCAGCTAGAACACGACTGTATGAAGTCTGCACAGC AAACTGTTGGAAACCACCATTGTTTGATTGCTGTATTGACGAAGGACCTAGCCACCTGAAGATTTTTGTTTACAAGGTGATAGTAGAGATTGAGGAATCA GAAAGCACCATCTTGGAATGTTTCGGAGAAGAACACACAAGGAAGAAAGATGCAGCTGAGAGTGCAGCAAAGGCCGCCTTGTGGTACCTAAAACATCAAG GCTACATAGTGTAA
AA sequence Show only first row Show all	>Lus10019587 pacid=23142545 polypeptide=Lus10019587 locus=Lus10019587.g ID=Lus10019587.BGIv1.0 annot-version=v1.0 MSKLVGSVIFAQAYIRDQPFDPCQFFALGRPCSVICTKESEGSIHELTGRSSRDHPNSEVRCNKGHHWLQKKTIADLVEALVGGFIVDSGFKGATAFLKW IGIKVGFDPSQVSKICAASCRYMPLSTSLEIAALENSLGYSFHHKGLLLQAFLHPSYNKHGGGCYQRLEFLGDAVMDYLITSYLFSVYPRMKPGHLTDLR SALVNNRAFAKVAVVRSFHKFLISESSALSEAIKAYVGFVEAPPREGGLSEGPRCPKALGDLVESCMGAIFLDTGFNLNHVWKLVLSFLDPIMKCPNLQV NYVRELRELCQSYNWVLEFEESKKGRVFTVEVRVGNKDLSLSASASYSSKKEATKIASQKVYAELKAHGYAQKSSSLEKVLKDSTKEEAKLIGYDETPID ISTAGVCEPAERVYDPQNYSIKRVGDGKPARLNSGGAETQQHPLALQASGVSHLRSARTRLYEVCTANCWKPPLFDCCIDEGPSHLKIFVYKVIVEIEES ESTILECFGEEHTRKKDAAESAAKAALWYLKHQGYIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019587 [exp]	0	1
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	2.0	0.8406
AT5G24340			3'-5' exonuclease domain-conta...		Lus10022376 [exp]	3.5	0.8190
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Lus10016724 [exp]	5.5	0.7842
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	8.8	0.7722
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10016745 [exp]	16.4	0.7894
AT3G15390		SDE5	silencing defective 5 (.1.2)		Lus10025646 [exp]	16.7	0.7697
AT1G28760			Uncharacterized conserved prot...		Lus10034420 [exp]	25.0	0.7515
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	29.5	0.7445
AT2G26970			Polynucleotidyl transferase, r...		Lus10041292 [exp]	30.7	0.7550
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10021586 [exp]	31.1	0.7354

Compare expression of checked genes

Lus10019587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.