Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20320 1150 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2) AT3G03300 471 / 6e-145 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT3G43920 205 / 2e-53 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT1G01040 176 / 2e-44 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT1G35530 90 / 7e-18 DEAD/DEAH box RNA helicase family protein (.1.2) AT3G22330 63 / 8e-10 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT3G22310 58 / 4e-08 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT5G14610 53 / 1e-06 DEAD box RNA helicase family protein (.1.2) AT4G15850 52 / 2e-06 ATRH1 RNA helicase 1 (.1) AT3G01540 52 / 2e-06 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016367 [exp] 478 / 8e-146 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 458 / 1e-138 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10036447 [exp] 438 / 2e-133 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10030176 [exp] 330 / 1e-96 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005142 [exp] 187 / 6e-48 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10040013 [exp] 134 / 1e-33 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2) Lus10030177 [exp] 107 / 2e-23 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10038975 [exp] 59 / 3e-08 AT3G22330 639 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 58 / 3e-08 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188800 [exp] 1461 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.010G181400 [exp] 489 / 1e-151 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3) Potri.008G075900 [exp] 481 / 8e-149 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.018G047500 [exp] 456 / 7e-138 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 183 / 1e-46 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.013G109600 [exp] 89 / 1e-17 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.012G045800 [exp] 57 / 8e-08 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G023100 [exp] 57 / 8e-08 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.001G347100 [exp] 56 / 1e-07 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 54 / 5e-07 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [flax] [poplar] RNase_III PF00636 [flax] [poplar] Ribonuclease_3 Ribonuclease III domain CL0196 [flax] [poplar] DSRM PF03368 [flax] [poplar] Dicer_dimer Dicer dimerisation domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10019588 pacid=23142533 polypeptide=Lus10019588 locus=Lus10019588.g ID=Lus10019588.BGIv1.0 annot-version=v1.0 ATGCCGGACGGAGAAACCTCCTGCTGCGTCGTCGCCGCTTCCTCAACTCTTGCACCCATGGCCACCACCTCTGCTCCTTCTTCTTCTTCCTACACTGCTT TCACTCACGAGGCTGCCGCCGCCGCTGTCAATTCCTCGCCTGAAGCTCGATACACTGGGAAGGATCCTAGAAAAACTGCTAGGAAGTATCAGCTGGAGTT GTGCGAGAAGGCTATGGAAGAGAACATAATCGTGTGGTTGGGGACAGGTTGCGGGAAAACTCACATTGCTGTGCTGCTTATTCATGAATTTGGAAATCTG ATCAGGAGTCCTCAGAAGAAAGTATGCGTGTTTCTTGCTCCTACAGTTGCTTTGGTGAATCAGCAAGCAAAGGTGATAGAAGATTCTATTGATTTCAAGG TTGGGATCCATTGTGGGAGCTCCCAGAGTTCAAAAACCCATGCAGATTGGGAGATGGAAATTCAAGATTGTGAGATTCTTGTCATGACACCTCAGATACT GTTGCACAATTTAAGTCATAGCTTCATCACGATGGAGATGATTGTGCTTCTGATATTTGATGAGTGTCATCATGCTCAAGTTAAAAGCGATCATCCATAT TCTAGAATCATGAAAGTTTTCTACAACAATTTTAATGGTGCAGTCCCTCGTATATTTGGCATGACTGCATCTCCAGTTGTAGGAAAAGGCGCATCTAGTC AGACAAATTTATCGAGAAGTATCAATAGTCTCGAATCATTATTGAATGCAAAGGTTTACTCTGTAGAAAATAGAGAAGAATTGGATCGTTATGTGGCTAA TCCTACAGTTAGAATATATTTATACAGGGCAATGGATTCCCATGAATTATGTGCCAGTCAACTTGGGAAATATATGCAGCAGTGTATCTCAGAACTCACG AAGAAGGGAAATGATTGTAAAAATCCGGAAAGTGTTCGAAGCACCAAAAAGATGCTCCATCGAGTGCATGAAAACATGCTATTTTGTTTGGAAAAGCTTG GTCTCTTTGGAGCTCTACAAGCTTGCCAAGTTCTTTCGAGTGGGGATCTCTGCGAGTGGAATGAAGTAATGGAAGCAGAAGGAATGCTCAGTGATGCATC TGTGCGTGATAAATATTTAGCTGAAGCTGCAAAGGTCATCTCTTCGAATTGCTCAGTTGATGGCATTCCATGTTGTGTCTCATCGTCAGAAGTTCTTAGG GAACCATTTTTCTCAGCAAAGCTTTTACGCCTTATTGGAATTCTTTCTGAATTCAGGTTGCAACGCGATATGAAGTGTATTGTTTTCGTCAATAGGATTG TCATTGCGAGATCCTTATCTTATGTACTTCAAAACCTACAAAATTTGCCTTCTTGGAAGTGTGGCTTTCTTGTTGGGGTCCATTCTGGACCGAGGAATAT GTCTAGGAAAACAGTAAACAAAATTCTTGAGCAGTTCCGCACTGGAAAGTTGAATTTGTTGGTTGCAACTAAAGTTGGTGAAGAAGGACTTGATATTCAG ACGTGTTGCCTAGTAATCCGTTTTGACCTTCCAGAAACTGTTGCAAGCTTTATACAATCAAGAGGTCGTGCTCGAATGCCCCAGTCTGAATATGCTTTTC TGGTGAACAGTGACAACCAAAATGAGCGAGACCTAATACAAAGCTTCCAGAAAGATGAAGATAGGATGAATGTTGAAATCTCTTGCAGGACAACTGATGA TAAATTTGTTGGCTCTGAGGAAAGAGTATATAAAGTAGAATCATCTGGTGCTTGTATCAGTTCTGGATATAGTATCTCATTGCTTCATCATTACTGTTCA AAACTCCCTCATGATGAGTTTCAAGTGCTCTGTACGCTAACTGAACCATCTAACAGGTTCTTCAACCCCAAGCCAGAATTTTACTATTTTGATGACTTGG AAGGTAGCGTGTGCCAAATCATCTTACCTTCCAATGCTCCATTACATCAAATAACCGGTGCGCCACAATCTTCTACGGAAGCTGCAAAAAAAGATGCTTG TCTGAAAGCCATTGAACAATTGCATAAGTTGGGTGCATTAAGCAACTTCCTTTTGCCCGATCGAGGGATTTTAGAGGAAGAATCAGCAGTGGCATCTTCA GCCTTTGTGGACTGTGGAGAGCAGGGTTCCCTAGAACTTCATGAGATGGTTTCCCCTAGAATCCTGAAGGAATCATGGACAGTTGCAGAGGGCTTAATCA TTTTGAACTCTTATTATATAGAATTTTGTCCAGTTCCCGAAGATCGTACCTACAAGAAGTTTGGTCTTTTTCTCAAGGCACCTTTGCCGCAAGATGCTGT GTGCATGGAACTTGATCTGCATTTGGCTCATGGTAGATATGTTATAACAAAGCTTGTTCCATCTGGATATTCAACCTTCAATACAGATGAGATTATGGAG GCACAGAATTTCCAAGAAATGTTTCTCAAGGTCATTCTTGACCGGTCCGAACTTGCTTCTGGATATGTTCCTTTGGGAAATAATGCATTCTCTAAATCAA GTCCAACTTTCTATTTGCTGCTTCCTGTCATCTTGAAGGGCTGCGAAAATGAAGTGATGGTAGATTGGGATATCCTTAGAACTTGCTTATCATCTCCTAT TTTCAGAAGCCCTGGTGATGTGACGGTAGAGGAAGACCCCATCTCTGACTCTCATTTGCAACTTGCTAATGGTCTGAAAAGAATAGCGGATGTTGAGAAT AGTTTAGTGTATGTTCCATACAAGAAACAGTCATACTTTATCACTAACGTCGTTCCTGAAAAGAATGGTTTCAGCCCACACAAAGGTTCAGTGCTGCCTA GCCATGTGGACCATTTGATTACAACGTTCAACATCCATCTTCAGTATCCTGCACAGCCGCTTCTATGTGCGAAACCATTATTTTTTTTGCACAACTTGCT TCACAATCGGAGAAAAGTGGATTCAGAATCTTTGGAACTGGATGAGTACTTCATTGATTTGGCCCCAGAGCTCTGTGAGTTGAAGATTGTAGGTTTCTCT AAAGATATTGGGAGTTCAGTTTCTCTGTTACCATCGTTCATGCATCGTCTTGAGAACTTGCTTGTGGCCATTGAACTGAGATGCCTATTAGCTGCCTCAT TTCCGGAGGGAGCTGAAATCACAGCCAATAGAGTTCTGGAAGCACTCACCACAGAAAACTGCCAAGAGCGCGTTTCTCTTGAAAGACTCGAAATTCTGGG AGATGCGTTTCTTAAATTTGCTGTTGGTCGTTGCCTGTTTCTTCTTAACGATGCCCTTGACGAGGGGGAGCTGACAAACAAAAGATCTAATGCGGTTAAT AATTCCAATTTGTTCAAGTTAGCTATTAGAAGCAACTTACAGGTATTAATAAATCTCTGA
AA sequence Show only first row Show all	>Lus10019588 pacid=23142533 polypeptide=Lus10019588 locus=Lus10019588.g ID=Lus10019588.BGIv1.0 annot-version=v1.0 MPDGETSCCVVAASSTLAPMATTSAPSSSSYTAFTHEAAAAAVNSSPEARYTGKDPRKTARKYQLELCEKAMEENIIVWLGTGCGKTHIAVLLIHEFGNL IRSPQKKVCVFLAPTVALVNQQAKVIEDSIDFKVGIHCGSSQSSKTHADWEMEIQDCEILVMTPQILLHNLSHSFITMEMIVLLIFDECHHAQVKSDHPY SRIMKVFYNNFNGAVPRIFGMTASPVVGKGASSQTNLSRSINSLESLLNAKVYSVENREELDRYVANPTVRIYLYRAMDSHELCASQLGKYMQQCISELT KKGNDCKNPESVRSTKKMLHRVHENMLFCLEKLGLFGALQACQVLSSGDLCEWNEVMEAEGMLSDASVRDKYLAEAAKVISSNCSVDGIPCCVSSSEVLR EPFFSAKLLRLIGILSEFRLQRDMKCIVFVNRIVIARSLSYVLQNLQNLPSWKCGFLVGVHSGPRNMSRKTVNKILEQFRTGKLNLLVATKVGEEGLDIQ TCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVNSDNQNERDLIQSFQKDEDRMNVEISCRTTDDKFVGSEERVYKVESSGACISSGYSISLLHHYCS KLPHDEFQVLCTLTEPSNRFFNPKPEFYYFDDLEGSVCQIILPSNAPLHQITGAPQSSTEAAKKDACLKAIEQLHKLGALSNFLLPDRGILEEESAVASS AFVDCGEQGSLELHEMVSPRILKESWTVAEGLIILNSYYIEFCPVPEDRTYKKFGLFLKAPLPQDAVCMELDLHLAHGRYVITKLVPSGYSTFNTDEIME AQNFQEMFLKVILDRSELASGYVPLGNNAFSKSSPTFYLLLPVILKGCENEVMVDWDILRTCLSSPIFRSPGDVTVEEDPISDSHLQLANGLKRIADVEN SLVYVPYKKQSYFITNVVPEKNGFSPHKGSVLPSHVDHLITTFNIHLQYPAQPLLCAKPLFFLHNLLHNRRKVDSESLELDEYFIDLAPELCELKIVGFS KDIGSSVSLLPSFMHRLENLLVAIELRCLLAASFPEGAEITANRVLEALTTENCQERVSLERLEILGDAFLKFAVGRCLFLLNDALDEGELTNKRSNAVN NSNLFKLAIRSNLQVLINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	0	1
					Lus10004294 [exp]	5.5	0.9341
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Lus10001987 [exp]	7.5	0.9274
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10016727 [exp]	8.2	0.9353
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10041856 [exp]	8.5	0.9372
AT4G15802		AtHSBP	Arabidopsis thaliana heat shoc...		Lus10000501 [exp]	9.3	0.9007
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	12.4	0.9282
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10036025 [exp]	15.4	0.8494
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	16.1	0.9307
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10019616 [exp]	16.6	0.9084
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	18.4	0.9317

Compare expression of checked genes

Lus10019588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.