Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35180 893 / 0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) AT4G19040 266 / 9e-79 EDR2 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) AT5G45560 262 / 5e-77 Pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein (.1) AT3G54800 192 / 9e-52 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) AT2G28320 189 / 7e-51 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) AT1G06050 177 / 8e-50 Protein of unknown function (DUF1336) (.1) AT5G10750 171 / 1e-47 Protein of unknown function (DUF1336) (.1) AT5G25010 157 / 4e-43 Protein of unknown function (DUF1336) (.1) AT5G24990 155 / 3e-42 Protein of unknown function (DUF1336) (.1) AT5G25020 116 / 1e-28 Protein of unknown function (DUF1336) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040015 [exp] 1281 / 0 AT5G35180 1034 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10040011 [exp] 728 / 0 AT5G35180 820 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019585 [exp] 659 / 0 AT5G35180 744 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10019068 [exp] 627 / 0 AT5G35180 589 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Lus10012149 [exp] 254 / 3e-74 AT4G19040 1227 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10007596 [exp] 253 / 2e-73 AT4G19040 1217 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Lus10021465 [exp] 191 / 3e-51 AT2G28320 1056 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10016094 [exp] 190 / 6e-51 AT2G28320 979 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Lus10008154 [exp] 172 / 3e-48 AT1G06050 362 / 5e-126 Protein of unknown function (DUF1336) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113100 [exp] 929 / 0 AT5G35180 1028 / 0.0 Protein of unknown function (DUF1336) (.1), Protein of unknown function (DUF1336) (.2), Protein of unknown function (DUF1336) (.3), Protein of unknown function (DUF1336) (.4) Potri.001G132900 [exp] 254 / 2e-74 AT4G19040 1159 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.003G100600 [exp] 244 / 1e-70 AT4G19040 1182 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.010G223400 [exp] 190 / 3e-51 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.009G011200 [exp] 188 / 2e-50 AT2G28320 1071 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1) Potri.008G213000 [exp] 187 / 3e-50 AT4G19040 1017 / 0.0 ENHANCED DISEASE RESISTANCE 2 (.1.2.3) Potri.008G038800 [exp] 184 / 6e-49 AT3G54800 922 / 0.0 Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.1), Pleckstrin homology (PH) and lipid-binding START domains-containing protein (.2) Potri.017G027700 [exp] 162 / 3e-44 AT1G06050 399 / 4e-140 Protein of unknown function (DUF1336) (.1) Potri.007G130400 [exp] 161 / 4e-44 AT1G06050 390 / 1e-136 Protein of unknown function (DUF1336) (.1) Potri.018G014234 [exp] 152 / 6e-41 AT5G10750 428 / 5e-152 Protein of unknown function (DUF1336) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07059 [flax] [poplar] DUF1336 Protein of unknown function (DUF1336)
Representative CDS sequence Show only first row Show all	>Lus10019591 pacid=23142527 polypeptide=Lus10019591 locus=Lus10019591.g ID=Lus10019591.BGIv1.0 annot-version=v1.0 ATGGAGGACGCGGTTGGGATAACGGAGGCGGAGGTGACAGTTAGGAACTTAGGAAGAAGCGTAGGATCGGAGAAGGAGATGTTTGGTAGTGGCGGCAGCA GCAGTAGTGGGGACGATAAGATAGATAAAGGTGGATTCGAGTATTTCGGCTGGATTTATCATTTAGGGACCAATTCGATCGGCCACGACTACTGCCATTT GCGCTTCTTGTTCATCAGAGGGAAGTACGTGGAGATGTACAAGCGTGATCCTCATGAGAACACCGGCATTAAGCCAATTAGGAGGGGTGTGGTAGGACCT ACCCTTATGGTCGAGGAGCTAGGGCGTAGGAAGGTCAATCAGGGGGATGTTTATGTCATTCGCTTCTACAGCCGACTGGATGAGACAAAGAAAGGAGATA TTGCTTGTGCTACAGCTGGAGAAGCTCGAAAATGGATGGAAGCGTTTGATCATGCAAAGCAACAGGCTGAATTTGAGCTCTCAACCAGTCGGAATGCAAG AAACAATTTAAGCATTGAAAATGAGATCGATTTAGAAGGTCGTCGACCCAGAATAAGGCGCTATGCACATGGATTAAAAAGGCTTATCAGGATAGGGCAA GGTCCCGAAACATTGTTGCAGCAAGCCTCGAATTTGGTTGGCAATGCAAAGTCAGATGGATTTTTTGATGCTGATAGCGAAGATGTAACCGAAGTACACC GGTGGAGATGTGTGCGCACAGTAAATGGTGTTCGAATCTTTGAGAATGTGTCAAATACCAAGGATGATAAAGGTACTCTTGTGAAAGCGGTTGGTGTTCT TGATGCAAGTGCTGATACTGTCTTTGACGTGTTCTTAAACCTGGATCAACACCAAAGATATGAATGGGACACATTGACAGGGGACTTGGAGCTCTTAGAT TCCTATGATGGACACTATGATGTTTTGTATGGCACATATGACCAGAAGTATCTTACCCGTTGGGAGATAAGAAATCTGAGTGCCACTGTGGGTTCAAACA AATCTCTCGTTAGCCAAATGGTAGAGACAAATCAAGATGGTTGGTATAGATGGAAACAAAACAGCTTTACCAAGTTTGAAAATTCTATCGCTTATGCTTT GTTGGCGCAAGTGGCAGGTTTGAAAGAATATATAGGAGCAAGTCCGGCATTGAGAGTTGAATCTTCCACAACGGTTGTTCGTTCAAAAATTTCTGAGGGG AACATTGGCGCCATTGACTATAATGATGCTGAAGTCAAAGACGAGTTTTATGATGCAATTGCTGGGGACTCATCATCATCGTCACCATCATCATCAGATG AAGAGGATGGTGGTAGTGATAAAAAACCTGCCATGAAGGACAGGAGAGTGAAACTCAAGAATGTTTCATGGGCCATTGCAAGCTTTTCTTTGAAGAGAAC TTCAGCAGCAAATGCAAATGCTATTTTAGATCCCAGTGTACCCCCAATCAGTATCGGACCAAGTGAGTTCAATGGTTCTCTTCACAAGGGGAAGGATGAA AAGGATTCAAACTGTTGGACTTCACCAAGTGGCTCAGGATTTAAGATCCGAGGGAAGACTTATCTCAAAGATAACTCTAAGGTGGTGGGTGGAGATCCTC TTCTCCAGCTCATAGCGGTTGATTGGTTCAAAGTCGATAGAGCCGCAGATGGGATTGCACAGCATCCGAAGTGTCTATTGCAGACAAAAGCTGGGAAGAA GCTTCCTTTTGTTCTGGTTATTAATTTACAGATTCCAGCAAAACCCCACTACAGTTTGGTACTCTACTACGCCGCAGATAGGCCAGTGAAAAAGGAATCT CTGCTGGGAAAATTTATAGATGGCACAGATATGTTTCGGGACTCGAGATTCAAGTTGATTCCCAGTATCATTGAGGGTTATTGGATGGTGAAACGTGCTG TTGGATCTAAAGCTTGCCTGTTGGGCAAAGCTGTAACTTGCAAGTACCTCAGACAAGACAATTTTCTGGAGATCGATGTAGATATCGGGTCATCATCAGT TGCAAGAAGTATAATTGGGCTTGTTCTAGGATACGTTACAAGTTTAGTTGTCGATCTTGCCATTCTCATTGAGGCAAATGAAGAGGCAGAGCTGCCGGAG TTTATACTAGGTACCGTCAGACTAAACAGACTCAAGCCTGAGAGTGCTATGCCTCTGGAGATATGA
AA sequence Show only first row Show all	>Lus10019591 pacid=23142527 polypeptide=Lus10019591 locus=Lus10019591.g ID=Lus10019591.BGIv1.0 annot-version=v1.0 MEDAVGITEAEVTVRNLGRSVGSEKEMFGSGGSSSSGDDKIDKGGFEYFGWIYHLGTNSIGHDYCHLRFLFIRGKYVEMYKRDPHENTGIKPIRRGVVGP TLMVEELGRRKVNQGDVYVIRFYSRLDETKKGDIACATAGEARKWMEAFDHAKQQAEFELSTSRNARNNLSIENEIDLEGRRPRIRRYAHGLKRLIRIGQ GPETLLQQASNLVGNAKSDGFFDADSEDVTEVHRWRCVRTVNGVRIFENVSNTKDDKGTLVKAVGVLDASADTVFDVFLNLDQHQRYEWDTLTGDLELLD SYDGHYDVLYGTYDQKYLTRWEIRNLSATVGSNKSLVSQMVETNQDGWYRWKQNSFTKFENSIAYALLAQVAGLKEYIGASPALRVESSTTVVRSKISEG NIGAIDYNDAEVKDEFYDAIAGDSSSSSPSSSDEEDGGSDKKPAMKDRRVKLKNVSWAIASFSLKRTSAANANAILDPSVPPISIGPSEFNGSLHKGKDE KDSNCWTSPSGSGFKIRGKTYLKDNSKVVGGDPLLQLIAVDWFKVDRAADGIAQHPKCLLQTKAGKKLPFVLVINLQIPAKPHYSLVLYYAADRPVKKES LLGKFIDGTDMFRDSRFKLIPSIIEGYWMVKRAVGSKACLLGKAVTCKYLRQDNFLEIDVDIGSSSVARSIIGLVLGYVTSLVVDLAILIEANEEAELPE FILGTVRLNRLKPESAMPLEI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35180			Protein of unknown function (D...		Lus10019591 [exp]	0	1
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	6.6	0.8242
AT4G37480			Chaperone DnaJ-domain superfam...		Lus10011536 [exp]	6.6	0.8380
AT4G11110		SPA2	SPA1-related 2 (.1)		Lus10032358 [exp]	8.1	0.8238
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	9.8	0.8144
AT5G20610			unknown protein		Lus10017162 [exp]	10.0	0.8185
AT1G10130		ATECA3, ECA3	ARABIDOPSIS THALIANA ER-TYPE C...		Lus10007734 [exp]	10.2	0.8013
AT1G52420			UDP-Glycosyltransferase superf...		Lus10037523 [exp]	11.3	0.7865
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10038576 [exp]	14.5	0.8146
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	16.0	0.7993
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	16.3	0.7818

Compare expression of checked genes

Lus10019591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.