Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15860 285 / 5e-98 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) AT3G12760 106 / 5e-28 unknown protein AT3G28970 41 / 0.0004 AAR3 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040019 [exp] 392 / 2e-140 AT1G15860 278 / 2e-95 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10039198 [exp] 286 / 2e-98 AT1G15860 369 / 2e-131 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10013742 [exp] 285 / 6e-97 AT1G15860 367 / 5e-129 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10026216 [exp] 196 / 3e-64 AT1G15860 252 / 3e-86 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Lus10000875 [exp] 104 / 3e-27 AT3G12760 383 / 3e-136 unknown protein Lus10009599 [exp] 103 / 6e-27 AT3G12760 380 / 3e-135 unknown protein Lus10030685 [exp] 43 / 0.0001 AT3G28970 255 / 4e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Lus10005235 [exp] 42 / 0.0002 AT3G28970 258 / 1e-84 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112200 [exp] 308 / 3e-107 AT1G15860 267 / 4e-91 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.003G180300 [exp] 281 / 1e-96 AT1G15860 348 / 6e-123 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.001G047900 [exp] 279 / 1e-95 AT1G15860 328 / 3e-115 Domain of unknown function (DUF298) (.1), Domain of unknown function (DUF298) (.2), Domain of unknown function (DUF298) (.3) Potri.008G083800 [exp] 102 / 3e-26 AT3G12760 415 / 1e-148 unknown protein Potri.017G084300 [exp] 43 / 7e-05 AT3G28970 269 / 1e-90 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1) Potri.004G122100 [exp] 42 / 0.0002 AT3G28970 296 / 3e-100 antiauxin-resistant 3, Domain of unknown function (DUF298) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF03556 [flax] [poplar] Cullin_binding Cullin binding
Representative CDS sequence Show only first row Show all	>Lus10019598 pacid=23142536 polypeptide=Lus10019598 locus=Lus10019598.g ID=Lus10019598.BGIv1.0 annot-version=v1.0 ATGATGACAGAGGCTTTTGAGCTTTTTGGCATTCTAGTATTGTTCTTACTGATTTATGACCCGCCTTCAGGTAAAACTCGCTTAAAGGAGAGTGACCAGA TCGACAGTCTATTTGATTCTTATGCAAACACCTCACTGGGCATGATCGACCCAGAAGGAGTTGAAACATTGTGTTCAGACATGAAAGTTGGATACGCTGA TGTGAGGATCCTGATGCTTGCATGGAAAATGAAAGCTAAGCAGCAGGGATACTTTACCAGGGATGAGTGGCAAACAGGTTTGAAGGCGCTTAAGGCTAAT ACTATCTTGAAACTAGTGAAGTCACTGTCAACACTCCAGAAAGAGGTGGAAGCGCCAGAAAATTTTGAGGATTTCTACTCATTTGCATTCAAGTACTGCC TTACAGAAGAGAAGCAAAAAGGCGTAGACATCGAAACCATCTGCGAGTTGCTGAAAATAGTCCTGGGGTTGCAATTCTGTACCCAGGTTGATTCACTAGT TGAGTACCTAAAGGTCCAGAAAGATTACAAAGTGATAAATAACGATCAGTGGATAGGTTTCCTTCGGTTCTGTAAGGAGATTACGTTTCCAGATCTTGGA GACTATGATGAGAACCAAGCTTGGCCGTTGATCCTTGACAATTTTGTAGACTGGGTGAAGAAGAAAGTCAGATAG
AA sequence Show only first row Show all	>Lus10019598 pacid=23142536 polypeptide=Lus10019598 locus=Lus10019598.g ID=Lus10019598.BGIv1.0 annot-version=v1.0 MMTEAFELFGILVLFLLIYDPPSGKTRLKESDQIDSLFDSYANTSLGMIDPEGVETLCSDMKVGYADVRILMLAWKMKAKQQGYFTRDEWQTGLKALKAN TILKLVKSLSTLQKEVEAPENFEDFYSFAFKYCLTEEKQKGVDIETICELLKIVLGLQFCTQVDSLVEYLKVQKDYKVINNDQWIGFLRFCKEITFPDLG DYDENQAWPLILDNFVDWVKKKVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15860			Domain of unknown function (DU...		Lus10019598 [exp]	0	1
AT1G49880		EMB3106, AtErv1...	EMBRYO DEFECTIVE 3106, Erv1/Al...		Lus10002121 [exp]	1.7	0.9162
AT3G58180			ARM repeat superfamily protein...		Lus10006688 [exp]	8.1	0.9090
AT2G04790			unknown protein		Lus10006402 [exp]	10.7	0.8883
AT5G09380			RNA polymerase III RPC4 (.1)		Lus10019022 [exp]	13.9	0.8844
AT1G04780			Ankyrin repeat family protein ...		Lus10000752 [exp]	14.0	0.8781
AT5G27620		CYCH;1	cyclin H;1 (.1)		Lus10037811 [exp]	15.3	0.9001
AT1G76370			Protein kinase superfamily pro...		Lus10007041 [exp]	25.5	0.8887
AT5G57280		RID2	root initiation defective 2, S...		Lus10028960 [exp]	30.9	0.8830
AT3G58180			ARM repeat superfamily protein...		Lus10007032 [exp]	41.2	0.8715
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	41.2	0.8819

Compare expression of checked genes

Lus10019598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.