Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23290 178 / 3e-52 CRK21 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) AT4G23180 176 / 6e-51 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23240 168 / 2e-50 CRK16 cysteine-rich RLK (RECEPTOR-like protein kinase) 16 (.1) AT4G23320 168 / 9e-50 CRK24 cysteine-rich RLK (RECEPTOR-like protein kinase) 24 (.1) AT3G16030 171 / 9e-49 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT4G11530 169 / 1e-48 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23270 169 / 1e-48 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G23200 169 / 1e-48 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT1G65790 170 / 2e-48 ARK1 receptor kinase 1 (.1) AT4G11460 169 / 2e-48 CRK30 cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040020 [exp] 388 / 3e-138 AT4G23180 246 / 4e-77 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10019061 [exp] 291 / 1e-93 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10024081 [exp] 185 / 6e-54 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10036314 [exp] 175 / 9e-53 AT4G23180 315 / 6e-102 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10041639 [exp] 182 / 1e-52 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10036313 [exp] 171 / 6e-51 AT4G03230 241 / 9e-71 S-locus lectin protein kinase family protein (.1) Lus10033752 [exp] 167 / 5e-50 AT4G03230 497 / 6e-169 S-locus lectin protein kinase family protein (.1) Lus10031603 [exp] 174 / 1e-49 AT4G03230 558 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025774 [exp] 172 / 2e-49 AT3G16030 390 / 2e-123 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 278 / 2e-88 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 265 / 9e-84 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 263 / 3e-83 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111751 [exp] 214 / 7e-70 AT4G23290 255 / 2e-81 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Potri.018G111600 [exp] 222 / 2e-67 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.005G014802 [exp] 184 / 5e-55 AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) Potri.010G018050 [exp] 174 / 9e-54 AT4G27300 310 / 2e-100 S-locus lectin protein kinase family protein (.1) Potri.011G027900 [exp] 182 / 1e-53 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G125201 [exp] 172 / 4e-53 AT4G27300 328 / 1e-107 S-locus lectin protein kinase family protein (.1) Potri.011G027600 [exp] 177 / 4e-52 AT4G23280 461 / 3e-156 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10019599 pacid=23142548 polypeptide=Lus10019599 locus=Lus10019599.g ID=Lus10019599.BGIv1.0 annot-version=v1.0 ATGCTGGTGTACGAATTCATGCCCAACAAAAGCCTCGACCTCTATCTCTTGGGTCTCTCTATATATACTTGTGTTATATCTTTCTATTCTCTCACCAACC TTCATTATGTTGTCGTTCCTGACGGATCAAATTTCACAACAGATCCAGTGAGGAAGCTAAGGTTGGACTGGAACAAGAGGGTTAGGATCATTGAAGGAGT GACTCAGGGGCTATTGTACCTTCAGGAGTACTCAAACTTCACCATAATTCATAGGGATCTCAAGGCCAGTAACATCCTTCTCGATGATGTCATGAACCCT AAGATTTCTGATTTTGGGATGGCCAAGCTCTTTAGGAAAGATATCGATGAAGCCAGCACTAGCAATATTGTGGGAACATATGGATACGTTCCTCCTGAAT ATGTGAAGAAAGGGATATACTCTATGAAATACGATGTGTACAGCTTCGGAGTCTTGCTCCTGCAAATTGTCAGCGGCAAAAGAACCAGACTTTATTATGG TCCCAATCAAGACATGCATCTCTTGGAACATGAAAATCCTGACGAGAGGCCGACAATGTTGGAAGTGCCATCTGCTCTGAGAAATGGTGCAGCAGCTTTG GAAATGGCTGTCCCAAAAAGACCAGCCTTTTCCGCGTCAAGGGTAAATGAAAAGGGATCTGCAACGAGTTCCAGGCCAGAAACTACTTCGTTCAACGACG CTGAAATATCTCAAGTAGAACCTCGTTGGCACTAA
AA sequence Show only first row Show all	>Lus10019599 pacid=23142548 polypeptide=Lus10019599 locus=Lus10019599.g ID=Lus10019599.BGIv1.0 annot-version=v1.0 MLVYEFMPNKSLDLYLLGLSIYTCVISFYSLTNLHYVVVPDGSNFTTDPVRKLRLDWNKRVRIIEGVTQGLLYLQEYSNFTIIHRDLKASNILLDDVMNP KISDFGMAKLFRKDIDEASTSNIVGTYGYVPPEYVKKGIYSMKYDVYSFGVLLLQIVSGKRTRLYYGPNQDMHLLEHENPDERPTMLEVPSALRNGAAAL EMAVPKRPAFSASRVNEKGSATSSRPETTSFNDAEISQVEPRWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23290		CRK21	cysteine-rich RLK (RECEPTOR-li...		Lus10019599 [exp]	0	1
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10014840 [exp]	8.3	0.7444
					Lus10011795 [exp]	13.2	0.7183
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	14.6	0.7327
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	20.6	0.7254
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	24.1	0.7261
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	25.1	0.7191
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	27.1	0.7227
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	29.2	0.7000
					Lus10010603 [exp]	29.9	0.6964
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	31.0	0.7131

Compare expression of checked genes

Lus10019599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.