Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19810 62 / 3e-11 ChiC class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT1G61420 62 / 8e-11 S-locus lectin protein kinase family protein (.1) AT4G00970 61 / 1e-10 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G19820 60 / 2e-10 Glycosyl hydrolase family protein with chitinase insertion domain (.1) AT5G35960 60 / 2e-10 Protein kinase family protein (.1) AT4G00960 59 / 4e-10 Protein kinase superfamily protein (.1) AT4G21390 59 / 5e-10 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 59 / 5e-10 S-locus lectin protein kinase family protein (.1) AT1G67520 58 / 9e-10 lectin protein kinase family protein (.1) AT1G56140 58 / 1e-09 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040021 [exp] 380 / 3e-131 AT4G19810 278 / 5e-89 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019061 [exp] 173 / 8e-50 AT4G21380 338 / 5e-104 receptor kinase 3 (.1) Lus10024081 [exp] 72 / 4e-14 AT1G61500 333 / 5e-102 S-locus lectin protein kinase family protein (.1) Lus10041639 [exp] 70 / 2e-13 AT4G11900 338 / 7e-104 S-locus lectin protein kinase family protein (.1) Lus10036306 [exp] 67 / 9e-13 AT4G19810 397 / 6e-138 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10036315 [exp] 66 / 2e-12 AT4G19820 253 / 3e-81 Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10019060 [exp] 64 / 1e-11 AT4G19810 437 / 1e-149 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Lus10027970 [exp] 59 / 8e-10 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10006742 [exp] 59 / 1e-09 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111900 [exp] 156 / 1e-43 AT3G16030 367 / 2e-114 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.018G111700 [exp] 144 / 1e-39 AT4G23200 363 / 1e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111800 [exp] 144 / 2e-39 AT4G23200 362 / 4e-115 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) Potri.018G111600 [exp] 110 / 8e-28 AT4G23180 377 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G030650 [exp] 65 / 5e-12 AT4G05200 476 / 1e-159 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.006G188400 [exp] 61 / 7e-11 AT4G19810 477 / 2e-169 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.011G037300 [exp] 62 / 8e-11 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.006G188300 [exp] 61 / 1e-10 AT4G19810 379 / 2e-130 class V chitinase, Glycosyl hydrolase family protein with chitinase insertion domain (.1) Potri.001G412300 [exp] 60 / 4e-10 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G185500 [exp] 59 / 4e-10 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10019600 pacid=23142540 polypeptide=Lus10019600 locus=Lus10019600.g ID=Lus10019600.BGIv1.0 annot-version=v1.0 ATGGGGTACAAGTTGGTGAGATCATTCATTCAGAACTACGGATTCGGAGCAAAGAAAATGTATAATTCAGGTAGAGTAGTGGATTACTTTGTTGTGGGGC CGACTTGGATCAACTACGACGATGTGGAAGCGATGAGGGCTAAAGTTGGTTACGCCATGGAAAAGGGTCTCCTCGGCTTCAACGCGTTCCAGTTGAGTAA TGACGACAACGGGGAGCTAACCCGCGCAGATGGTATATTTGACTTGGATTGCTTTGCAGCTCAGTTAATGGAGATTGACATGGAGGAAGGTGGTAACAAG AAGCGGAACCAACTGTTGCTGAAAATCCTGCTTCCAATTGCTGCCGCCGTTGCTCTATTATTCGCCATCTTCCTTGTCTGCTTCAGGAGGAAGCATAAAG GTAACAACACAGAATCTAATAGTGCAGAATGCCATCTGTTGTCCAGCTCTAAGCCATTCGGTGGGGGAGACCCTCCGTATCTGAAAGCATTCACCTTCTC CGACATCAAAACCGCTACCAACGACTTCTCTGGCGATAACTTGCTTGGCTCTGGCGGCTTTGGGCCTGTTTACAAGGGCGTGTTAGATGGAGGGGAGGAA ATAGCAGTGAAAGACTATCAGAATCATCAACTCAAGGACATGAAGAATTCAGGAACGAGGTTTCCCTCACGGCTAGGCTTCAGCATGTCAATCTAG
AA sequence Show only first row Show all	>Lus10019600 pacid=23142540 polypeptide=Lus10019600 locus=Lus10019600.g ID=Lus10019600.BGIv1.0 annot-version=v1.0 MGYKLVRSFIQNYGFGAKKMYNSGRVVDYFVVGPTWINYDDVEAMRAKVGYAMEKGLLGFNAFQLSNDDNGELTRADGIFDLDCFAAQLMEIDMEEGGNK KRNQLLLKILLPIAAAVALLFAIFLVCFRRKHKGNNTESNSAECHLLSSSKPFGGGDPPYLKAFTFSDIKTATNDFSGDNLLGSGGFGPVYKGVLDGGEE IAVKDYQNHQLKDMKNSGTRFPSRLGFSMSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	0	1
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	2.4	0.8838
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	3.5	0.8698
					Lus10015310 [exp]	4.0	0.8716
					Lus10021453 [exp]	6.9	0.8561
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	6.9	0.8327
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	7.1	0.8430
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	8.0	0.7958
AT2G44820			unknown protein		Lus10026825 [exp]	8.8	0.8371
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023453 [exp]	8.8	0.8356
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	9.6	0.7730

Compare expression of checked genes

Lus10019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.