Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31020 434 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 414 / 3e-147 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 325 / 1e-110 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 324 / 3e-110 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 319 / 6e-109 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 316 / 2e-108 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 318 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 313 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 291 / 1e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 269 / 8e-89 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040038 [exp] 551 / 0 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 325 / 2e-110 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 324 / 6e-110 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 305 / 5e-103 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10022307 [exp] 306 / 1e-102 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10033575 [exp] 301 / 2e-101 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10030951 [exp] 294 / 4e-98 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10036842 [exp] 290 / 3e-96 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042075 [exp] 285 / 5e-95 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111400 [exp] 438 / 2e-156 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 437 / 8e-156 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 327 / 4e-111 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G117633 [exp] 325 / 6e-111 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G097300 [exp] 323 / 3e-110 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G087100 [exp] 319 / 2e-108 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 315 / 1e-106 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 312 / 3e-105 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.012G090800 [exp] 311 / 4e-105 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 311 / 9e-105 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10019604 pacid=23142530 polypeptide=Lus10019604 locus=Lus10019604.g ID=Lus10019604.BGIv1.0 annot-version=v1.0 ATGGGGAATGTGACGTCGAACGTGGCAGCGAAATTCGCCTTTTTCCCGCCGGACCCTCCTACGTACGACGTGCTTAAGGAGGAAGAAGGGAGGCTGGTGG TGCCAGGAGTGACGGCGGACAAGAACATGGAGGTCCATACGTTGGACACTAAAGCTGGGAATAAGGTTGTGGCCATGTTCTGGAAACACCCTTGTGCCAG ATTCACCCTTCTCTATTCACATGGCAATGCTGCCGACCTTGGCCAAATGCACGAGCTCTTCATTGAGCTCAGGGCTCATCTCAGACTCAACATCATGAGC TATGACTATTCAGGCTATGGAGTATCTTCAGGAAAGCCATCTGAGGTGAACACATACTATGACATTGAGGCAGTGTACAAGTGCTTGAAGGATGAGTATG GAGTAAAGCAGGAGGATTTGATAGTGTACGGACAGTCGGTTGGAAGTGGTCCGACCCTCCATTTAGCCTCACGACTGCACAACTTGAGAGGTGTTGTCCT TCACAGTGCCATCCTTTCCGGTATCCGGGTCTTGTATCCTGTCAAGATGACCCTATGGTTCGACATCTTTAAGGTCGAATCGAATATAGACAAGATTCGA CATGTCAACTGTCCTGTTCTTGTCATTCATGGAACCAGCGACGAGATAGTTGATTTCTCGCATGGAAAGAGACTGTGGGAACTGGCAAAGGAAAAGTATG AGCCTTTATGGGTGAAAGGTGGTGGGCATTGCAACCTGGAAACGTATCCAGAATACATAAAACACTTGAGGAAGTTTGTAAACGCCATGGAGAAGATGGC CATCTCCAAACCACCAGCAAAGCAACAGCCCAATGGGGAATCAGCTATGGAATCCAACAAGCAGACCAAGTGCTTAATCTTTCCCTTGAAAAGCCGGAGC GAGTAA
AA sequence Show only first row Show all	>Lus10019604 pacid=23142530 polypeptide=Lus10019604 locus=Lus10019604.g ID=Lus10019604.BGIv1.0 annot-version=v1.0 MGNVTSNVAAKFAFFPPDPPTYDVLKEEEGRLVVPGVTADKNMEVHTLDTKAGNKVVAMFWKHPCARFTLLYSHGNAADLGQMHELFIELRAHLRLNIMS YDYSGYGVSSGKPSEVNTYYDIEAVYKCLKDEYGVKQEDLIVYGQSVGSGPTLHLASRLHNLRGVVLHSAILSGIRVLYPVKMTLWFDIFKVESNIDKIR HVNCPVLVIHGTSDEIVDFSHGKRLWELAKEKYEPLWVKGGGHCNLETYPEYIKHLRKFVNAMEKMAISKPPAKQQPNGESAMESNKQTKCLIFPLKSRS E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	0	1
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	3.6	0.8269
AT1G30820			CTP synthase family protein (....		Lus10001218 [exp]	4.7	0.8182
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	8.7	0.7960
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	11.2	0.7462
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	11.5	0.7342
AT1G73850			Protein of unknown function (D...		Lus10027226 [exp]	11.6	0.7739
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	12.1	0.7519
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	12.3	0.7844
AT2G40070			unknown protein		Lus10002493 [exp]	14.5	0.6896
AT3G13000			Protein of unknown function, D...		Lus10034787 [exp]	14.7	0.7505

Compare expression of checked genes

Lus10019604 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.