Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58170 655 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 654 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT4G26690 497 / 7e-166 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 493 / 2e-164 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 483 / 2e-160 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 484 / 6e-157 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 438 / 2e-143 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G08030 94 / 2e-20 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 88 / 3e-18 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040037 [exp] 1200 / 0 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10040036 [exp] 623 / 0 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 539 / 0 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 494 / 5e-165 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 490 / 5e-163 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 490 / 7e-163 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 460 / 2e-151 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 421 / 4e-137 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 388 / 2e-125 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 730 / 0 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 724 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360800 [exp] 488 / 1e-162 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 487 / 4e-162 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 82 / 2e-16 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10019605 pacid=23142553 polypeptide=Lus10019605 locus=Lus10019605.g ID=Lus10019605.BGIv1.0 annot-version=v1.0 ATGAGGGGTTTACTTTTTGTAATTTTGTTGATTCATGCAAGTTGCCCCTGTAGGGCTGCCGGTGACCCCAACGGCACATGGCATACGTTGAAAGGTTTGC AGCCAAAGGTGGTGGCTCGAGAAGGGTTTTCGGGACTATTCCCGGAATCGACTTCTATCTCTTACGATCAATTGGCATTTGATGGGTTGATTACGCTTTG CAATCTACAGTTAACAATAGATGGTAACGGAATTTGCCAGTCAGATATTGAGATCAGTAAATCGACCAACATACAAAATATCTATCCCGACAAAAAAAAG ACTTACAATATCAACGGACAAAAGGTTACTGGCTATTTCACCATTGATTACACTATGCAGCAGCTCATGGAAGAAGTTTCAGCAATGCAGAGTATCTGGA CTCGACCTGACTTCTTCGATGGCTATCCTCTCATGCCCTTTGACGACAAACAAAGTGGCGCACTAGCCATGTCTCTCTTGTGGGTCAATGTTCCGTACGT ACAATTCTACAAAGAACACAAGCTGAACATCCAAGAATACATAAACCATGTTGGCTTCAACGGCATCACATGCCTATCCTCCCCCGAAATCGGGTTCCTG AAAGCAATAAGTGCGAATAAGCCCAAAAACTTAAACCTCTACTTGGTCTTCCATGACAAAGATGCAATTGAACCCACCACAAAACAGAGCTACGGCTCCA TCTTGTCGAATCTGGGTTCGCTGAAGCCGATTGTGACAGGAATTGTTGTCCCTAAGGAATACATTTGGCCCGTGGAGGAATCGAATTACCTGGCAGCGAA TCCCACTAGTTTGGTGGCTGATGCCCATAAGCTAGGCTTGGAAGTTTATGCTTCCGGGTTTGCTAATGATAATAAGATTAGTTACAATTACAGTTACGAT CCAACTTTAGAGTATTTGAATTTTCTTACAAAGGGCGATTTTTCAGTTGATGGGTTCATTACTGATTTCCCTCCAACTGCCGGCGATGCAATCCAGTGTT TTGCCAAGTTGGGGGAGACGAGGGCAAGAAATGGTTCATCAGCGAGACCATTGGTGATAACTAAGGGAGGAGCAAGTGGGATATACGCAGCAAGCAGTGA TCTTGCGTATAAGAAGGCTGTAGAAGACGGCGCTGACGTGATCGATTGCAGCGTTCAAATGTCCAAAGACGGAGTTGCTTTCTGTATGGTCTCTCCAGAC TTGACTGAGGATACTACAGCTGCTTCCGTTTTCTTGGATCAATCCACCACCATCTCCGAAATCCAACACGAGGCTGGAATCTTCTCTTTTGAGCTGACTT GGGCCGACATTCAGTCTTTGCAACCTCAGATATCGACTCCTTTCGAGAAGAAGACAGGACTGAAGAGGAATCCTGCCTTTAGAAACAAAGGCAAATTTGT CACCTTGCCTGAATTTTTAGAGTTTGCCAATGCCAACAACGTAACTGGCGTTCTCATCAACTTAAATAATGCAGCATACTTAGCATCGAAGAAGGGACTT GACCTGGTGGGAACAGTGAGTGCCGCACTAAAACAGGCTCAATTTGACAAGCAGAGCAAGAGACTATTGTTTATCCAATCGGACCACTCTTCAGTGTTAT CAAAATTCAAAAATTTCGGGTCGAATTTAAGAAGGGTGTTGACAATTAAAGAAGAAGTGAGTGACGTGCCAAAGGAGACTGCGAATGACATCAAGAAGTA CGCTGATGCAGTTGCCTTGAACCGATACTCAATCATCACAACCAACGCCCAAGGGATGACCATGGACAAGACCAAAACCGTAGACTCGTTGCACGCTGCT GGCCTGGATGCCTTTGTCTACACCCTTGTTAACGAGTACTATTCTCTGGCTTTTGATTACTACTCTGATCCCACTCTCGAGATCGCCACCTTTGCTCACA CCGTTGGCGTTGATGCCTTCTTCACCGAGTTCCCGGGGACTGCCATCATGTATTTAAGGAACCCGTGCTCGGATTTGAACGATGTGAACCGTATCTACAC GATCGTACCAATCGAGCCAGGAACACTTGCTAAGGCAGCTCCAGCAGCTCCAGAGGCAGAAGCTCCACGACCAACGTTGACCAATAAAGACGTGATTGAT CCACCTCTTCCTATAGTTGTCCACAAATCTCCTCCAGCTCCGGCAGCTGCTGCACCACCTAAAGCTTCTTCTGCCACCAACAACGAGGTCGTCGGCGGAC TTCATTACTCCACAGCTACTGCTGTGGTCTTGCTCGCTGCCGGGTTTTGCTATTTTTAA
AA sequence Show only first row Show all	>Lus10019605 pacid=23142553 polypeptide=Lus10019605 locus=Lus10019605.g ID=Lus10019605.BGIv1.0 annot-version=v1.0 MRGLLFVILLIHASCPCRAAGDPNGTWHTLKGLQPKVVAREGFSGLFPESTSISYDQLAFDGLITLCNLQLTIDGNGICQSDIEISKSTNIQNIYPDKKK TYNINGQKVTGYFTIDYTMQQLMEEVSAMQSIWTRPDFFDGYPLMPFDDKQSGALAMSLLWVNVPYVQFYKEHKLNIQEYINHVGFNGITCLSSPEIGFL KAISANKPKNLNLYLVFHDKDAIEPTTKQSYGSILSNLGSLKPIVTGIVVPKEYIWPVEESNYLAANPTSLVADAHKLGLEVYASGFANDNKISYNYSYD PTLEYLNFLTKGDFSVDGFITDFPPTAGDAIQCFAKLGETRARNGSSARPLVITKGGASGIYAASSDLAYKKAVEDGADVIDCSVQMSKDGVAFCMVSPD LTEDTTAASVFLDQSTTISEIQHEAGIFSFELTWADIQSLQPQISTPFEKKTGLKRNPAFRNKGKFVTLPEFLEFANANNVTGVLINLNNAAYLASKKGL DLVGTVSAALKQAQFDKQSKRLLFIQSDHSSVLSKFKNFGSNLRRVLTIKEEVSDVPKETANDIKKYADAVALNRYSIITTNAQGMTMDKTKTVDSLHAA GLDAFVYTLVNEYYSLAFDYYSDPTLEIATFAHTVGVDAFFTEFPGTAIMYLRNPCSDLNDVNRIYTIVPIEPGTLAKAAPAAPEAEAPRPTLTNKDVID PPLPIVVHKSPPAPAAAAPPKASSATNNEVVGGLHYSTATAVVLLAAGFCYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	0	1
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	4.8	0.8494
AT1G11340			S-locus lectin protein kinase ...		Lus10018402 [exp]	5.3	0.7822
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	5.3	0.8039
AT3G58690			Protein kinase superfamily pro...		Lus10033606 [exp]	5.5	0.8131
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	8.4	0.8048
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	11.8	0.7636
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	12.0	0.7949
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	13.3	0.7042
AT1G49870			unknown protein		Lus10013902 [exp]	15.3	0.7824
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Lus10006518 [exp]	19.9	0.8045

Compare expression of checked genes

Lus10019605 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.