Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58050 454 / 2e-150 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G58170 453 / 3e-150 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT4G26690 346 / 7e-109 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66970 345 / 1e-108 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT5G55480 342 / 2e-107 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT3G20520 336 / 1e-105 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G66980 337 / 1e-102 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G08030 89 / 8e-19 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 80 / 9e-16 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040036 [exp] 605 / 0 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019605 [exp] 546 / 0 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 431 / 3e-141 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10031604 [exp] 379 / 9e-122 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 378 / 5e-121 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 377 / 2e-120 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 350 / 2e-110 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 324 / 4e-101 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 275 / 3e-83 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 485 / 6e-163 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 481 / 6e-161 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 366 / 8e-117 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 360 / 1e-114 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 91 / 2e-19 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10019606 pacid=23142523 polypeptide=Lus10019606 locus=Lus10019606.g ID=Lus10019606.BGIv1.0 annot-version=v1.0 ATGTTGAGGGGTTTGCTTTTATTTCTCTTCTTCATACCTTCAACTTTGTCTGGAAGAGCAGCCCCTGGTCCCAGCGCCAATGATGGTAGCCCGACGTGGC TAACTCTGAGCGGGAAGCAGCCAAAGGTGGTAGCTCGAGGCGGGTTCTCCGGGCTTTACCCAGAATCCAGCATCTTTGCAAACAGCATCGTCAAGACAAA TCCAGAACTGATTTTGCTCTGCAATCTACAGCTAACAATGGATAGCGTTGGAATCTGCAGGCCAGATGTTGAGATCAGTAACTCGACGACCATAGAGATG CTCTTCCCCAACAAAACAAAAACGTACAAGGTTAATGGACAAGATGTCACAGGTTATTTCAGCATCGATTACTCCATTCTCCAACTCAGCAATGCCACAG CGATTCAGAACGTATTGAAACGGACAGCAGTTTTTGACCTTGTCCCGATCCCAACGATTGATGATGTCCGTTTGGGTGCCCCGGCTTCAATGTGGGTGAA TGTTAAGTATGCACAATTTTATAACGAACACAAGCTGAGCATGGAGGATTACTTTGACAAATTGGGTCTGCGTGGCATCAATTACTTATCCTCTCCTGAG ATCGGTTTCTTGAAGGCAATGAGTGCTAAAAAACCACCAAGCATGAAGCTGTTTTTTGTCTTCCGCAGCAAAGATGCAGTTGAACCCACAACCAACAAGA CATACGGATCAATCTCATCGAATCTAGCAGCACTCAAGCCTATGGTAGCTGGAATTATTGCCCCGAAGGAGTATATATGGCCGGTCGAGAAATCCAACTA CTTAGCAGCATCCCCCACCACTATCGTGGCTGATGCTCATAAACTTGGTCTGGAAGTTTACGCTTCTGGCTTTGCAAATGATAATTTGCTCAGTTATAAC TACAGTTTTGATCCAACAGAAGAATATCTGAATTTTATCCGCAATGGCCAGTTCTCTGTTGATGGCTTCGTTACAGATTTCCCACCTACAGCAATGGACG CAGTTGAATGTTTTGCAAGCTTCAACAGTACCCAGGACAGAGCAGGGCGCCCTTTGATCATTACACGTGGTGGAGCAAGTGGGGTCTATGCAGGGAGCAG TGATCTTGCTTACCAGAAGGCAGTAGATGACGAGGCAGACATAATTGATTGCAGGGTTCAAATGTCCAAGGATGGAGTTGCTTTCTGTATGGCTTCGCCA GATCTCACTAAAGATACCACTGCAGCAACTGTTTTCATTGATAAGGCAACCACCATCAACGAAATCCAAAAAGCATCTGGAATATTTTCTTTNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNTTCACACTCAATTACACAGATGCAGTGCAGTCACTGCAAAGTGAAAACCTGTCTGTGTTTGTCTCCACCCTTTACAACGAATAC ATCACACTTGCATTTGACTACTTTGCAGACCCCATAGTTGAGATCTCTACTTATTTCCATCAAATTGGAGTCAATGGAACCATAACAGAATACCCGAGAA CTGCAAGCAAATATATGAGTAAGCATTCAATGCAAAAGCTTCTTCCATTTCTCAGAGAGAAGACAAATTAG
AA sequence Show only first row Show all	>Lus10019606 pacid=23142523 polypeptide=Lus10019606 locus=Lus10019606.g ID=Lus10019606.BGIv1.0 annot-version=v1.0 MLRGLLLFLFFIPSTLSGRAAPGPSANDGSPTWLTLSGKQPKVVARGGFSGLYPESSIFANSIVKTNPELILLCNLQLTMDSVGICRPDVEISNSTTIEM LFPNKTKTYKVNGQDVTGYFSIDYSILQLSNATAIQNVLKRTAVFDLVPIPTIDDVRLGAPASMWVNVKYAQFYNEHKLSMEDYFDKLGLRGINYLSSPE IGFLKAMSAKKPPSMKLFFVFRSKDAVEPTTNKTYGSISSNLAALKPMVAGIIAPKEYIWPVEKSNYLAASPTTIVADAHKLGLEVYASGFANDNLLSYN YSFDPTEEYLNFIRNGQFSVDGFVTDFPPTAMDAVECFASFNSTQDRAGRPLIITRGGASGVYAGSSDLAYQKAVDDEADIIDCRVQMSKDGVAFCMASP DLTKDTTAATVFIDKATTINEIQKASGIFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTLNYTDAVQSLQSENLSVFVSTLYNEY ITLAFDYFADPIVEISTYFHQIGVNGTITEYPRTASKYMSKHSMQKLLPFLREKTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	0	1
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	2.0	0.8740
AT4G05160			AMP-dependent synthetase and l...		Lus10013831 [exp]	2.4	0.8690
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	3.5	0.8400
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	3.9	0.8665
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10017683 [exp]	5.3	0.8601
AT5G56790			Protein kinase superfamily pro...		Lus10024111 [exp]	6.0	0.7873
AT1G05180		AXR1	AUXIN RESISTANT 1, NAD(P)-bind...		Lus10031562 [exp]	7.4	0.8581
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	8.4	0.8386
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	11.0	0.8317
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	11.3	0.7904

Compare expression of checked genes

Lus10019606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.