Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 175 / 1e-47 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040030 [exp] 486 / 7e-163 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10040031 [exp] 112 / 2e-30 AT5G58040 50 / 8e-09 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110100 [exp] 348 / 1e-108 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.006G187400 [exp] 302 / 9e-92 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.010G145150 [exp] 42 / 0.0008 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10019609 pacid=23142554 polypeptide=Lus10019609 locus=Lus10019609.g ID=Lus10019609.BGIv1.0 annot-version=v1.0 ATGAAGCATAGATATGAAATTGTGGACGATTACCATAGCAAACGAAGGAAGGATGAGGAATACCTAAGGAGGGAGTTTGCTGACAAGGAAGGGAGGGTGC TTAGCCACAGGGAAAGCTCGAGCCGCAGAAGAGGAAGAGATGATGCGATTGACTTGCGGAAGAGAGATGATCAGCAAAGAATTAGAGACTCCCTGGACGA TTATCATTCTAGGCACAAGGATGAGGTGTGGTTGTCGCGAGAACGGAGTGATAGGCCAAGAGAAAGAGAAGAGTTATATAGACCAAAACAATCCCACGAA GAACATTTCTCAAAACGCGAGAGAGACGAGGGACGTGGTTCTGCAAGGAGCGGTCGGGCAACTGCTGATGAGAAAGCATGGATTGGTAATACTAGAGGTA CTGATAAAGAGCACCAGCTTAAAGATTCTCTTCGAACTAGTGAACAGTCAAAGAAAAGGGATCGGGTAGACGATGCACGGGGAAACCAAGCTACGGGGAA GGAAAGAAGATCGAGGCAGGATAAGCCCAGTTCTAGAGCGGATCGTGCTGTTGATACTCCCGATAACCAAAAATCACAGGACAAAAAACATAAAGAAAGC ACGAGGAAGCTCAAGGAACCTGAGAGTGCAGATCACAGCTCATTGGGCTCACTGAAAAGCCGAGAAGACAAGACTGGTCAATCTGAGAACTTGGAGGTGA AAGACATCAGCAAGCAACGGAATGATAGCAATCAAAATGCAGCGCCACAACGCAACTCATCTAAAAGAGCTAAAGAAGATGCATTGTCTGATGAGGAACA GCATGATTCAAAAAAAGGCCGCTCAAAATTCGAGCGCTGGTCAAGCCAGAAGGAGAGGGAATTCAACATGAACAATAAGGCAGCACCATCTGCTAAATTA AAGAACGGAGATAAGAATGACAACGGTGGTGGGTCTTCTGAACCAAGCGGACATCTGCTGGACGAGGTTCCCAAGCGAATCCAGTCTGCCGAGATAGATT CTGTTGTAGAAGAGAAGGATGTTGTTGTTGATACAGCAGAGAACAAAGATGCGGACAAGAAACAGTTGGATGATCGTCATCTAGACACGGTGGAGAAGTT GAAGAAACGGAGTGAGAGGTTCAAGCTTCCTTTGGCTATCGAAAAAGATGCTTCGGCAACAAAGAAGACAGATACCGAGGCATTGCCTCTGGTTAGTAAA ATCGAGCCTGCTGCAGATGCAGAGGTCAAACCTGAGCGGCCTGCTCGTAGAAGAAGGTGGGTAGGGAACTAG
AA sequence Show only first row Show all	>Lus10019609 pacid=23142554 polypeptide=Lus10019609 locus=Lus10019609.g ID=Lus10019609.BGIv1.0 annot-version=v1.0 MKHRYEIVDDYHSKRRKDEEYLRREFADKEGRVLSHRESSSRRRGRDDAIDLRKRDDQQRIRDSLDDYHSRHKDEVWLSRERSDRPREREELYRPKQSHE EHFSKRERDEGRGSARSGRATADEKAWIGNTRGTDKEHQLKDSLRTSEQSKKRDRVDDARGNQATGKERRSRQDKPSSRADRAVDTPDNQKSQDKKHKES TRKLKEPESADHSSLGSLKSREDKTGQSENLEVKDISKQRNDSNQNAAPQRNSSKRAKEDALSDEEQHDSKKGRSKFERWSSQKEREFNMNNKAAPSAKL KNGDKNDNGGGSSEPSGHLLDEVPKRIQSAEIDSVVEEKDVVVDTAENKDADKKQLDDRHLDTVEKLKKRSERFKLPLAIEKDASATKKTDTEALPLVSK IEPAADAEVKPERPARRRRWVGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	0	1
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	2.0	0.8867
AT1G31870			unknown protein		Lus10034532 [exp]	4.9	0.8806
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000285 [exp]	9.2	0.8838
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002914 [exp]	9.4	0.8214
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10012010 [exp]	11.6	0.8354
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10030992 [exp]	15.0	0.8870
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	16.3	0.8860
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042127 [exp]	16.5	0.8115
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10037960 [exp]	17.3	0.8362
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	17.6	0.8807

Compare expression of checked genes

Lus10019609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.